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mkavulich wants to merge 204 commits intodevelopmkavulich/ufs-srweather-app:developfrom updates_after_repo_mergemkavulich/ufs-srweather-app:updates_after_repo_mergeCopy head branch name to clipboard

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Commits on Dec 11, 2020

• Feature/update model namelist definitions (ufs-community#377)

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• Cherry-pick ufs-community#343 from release branch: Allow running from crontab on Cheyenne, as well as fix workflow generation on Cheyenne (ufs-community#378)

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Commits on Dec 14, 2020

• Maximize RRFS_CONUS_[25,13,3]km grids so they span as much of HRRR CONUS domain as possible (ufs-community#360)

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Commits on Dec 29, 2020

• Automate creation of symlinks to fixed files (i.e. pregenerated grid, orography, and surface climatology files) in NCO mode; treat fixed files in NCO mode more in line with that in community mode

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Commits on Jan 6, 2021

• Enable fetching of FV3GFS files from NOAA HPSS after 202002600 (as well as before) for both nemsio and grib2 formats (ufs-community#391)

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Commits on Jan 11, 2021

• Fix stochastic physics namelist block. Change tm${cyc} to tm00. (ufs-community#387)

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Commits on Jan 12, 2021

• develop: Namelist changes following GSL, EMC, and DTC namelist consolidation meeting. (ufs-community#394)

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Commits on Jan 13, 2021

• Enhancements to Python plotting scripts (ufs-community#381)

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  BenjaminBlake-NOAA

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• Make DT_ATMOS, LAYOUT_X/Y, and BLOCKSIZE user-specifiable when using predefined grids (ufs-community#396)

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Commits on Jan 15, 2021

• develop: Fix to run workflow tasks on WCOSS (ufs-community#390)

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Commits on Jan 20, 2021

• Bugfixes for default values of grid parameters and forecast computational parameters; bugfix for setting FXILAM_NCO_BASEDIR in WE2E tests; other improvements. (ufs-community#403)

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Commits on Jan 22, 2021

• Add submission scripts for python scripts for hera specifically (ufs-community#412)

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Commits on Jan 25, 2021

• Improve the way the climatology file for Thompson MP is handled (ufs-community#414)

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Commits on Jan 27, 2021

• Improve the way LSM-related parameters are set. (ufs-community#416)

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• Add the FV3_HRRR suite to the workflow (ufs-community#382)

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Commits on Jan 28, 2021

• develop: add support for SPP. (ufs-community#409)

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Commits on Feb 3, 2021

• Remove SPP from input.nml.FV3 template until code is ready in ufs-weather-model. (ufs-community#420)

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• Improvements to run workflow with NAM ICs/LBCs (ufs-community#417)

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• Bug fix for setting GWD_HRRRsuite_BASEDIR when running the FV3_HRRR suite in NCO mode (ufs-community#421)

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Commits on Feb 11, 2021

• develop: changes required to process global NetCDF files. (ufs-community#424)

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Commits on Feb 18, 2021

• Add 'module purge' to the launch script for orion (ufs-community#438)

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  chan-hoo

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Commits on Mar 5, 2021

• Make WE2E tests work on the WCOSS Dell and Cray (ufs-community#450)

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Commits on Mar 11, 2021

• Fix the 'fdiag' issue on the develop branch (ufs-community#454)

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Commits on Mar 15, 2021

• Sub-hourly post-processing enabled by some new config.sh entries. (ufs-community#439)

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Commits on Mar 19, 2021

• Feature/add metplus (ufs-community#219)

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Commits on Mar 23, 2021

• Updating develop branch with updates from the release branch (ufs-community#457)

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Commits on Mar 26, 2021

• Rename GSD_RAP13km grid and adjust its write-component grid (ufs-community#458)

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Commits on Apr 5, 2021

• Fixed a couple typos and modified syntax for status message to work correctly (ufs-community#463)

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Commits on Apr 7, 2021

• Add functionality for user-defined OMP settings and for the RUN_FCST "--cpus-per-task" value. (ufs-community#459)

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  JeffBeck-NOAA

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Commits on Apr 8, 2021

• Modify path to external GFS data (ufs-community#461)

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Commits on Apr 14, 2021

• Export OMP settings in the make_orog ex-script and change the default… (ufs-community#474)

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Commits on Apr 16, 2021

• Add last three year global co2 data (ufs-community#477)

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Commits on Apr 19, 2021

• Update PR tempate to request name of branch PR will be issued to and documentation. (ufs-community#478)

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Commits on Apr 21, 2021

• develop: Changes to processing and output related to sub-hourly simulation settings (ufs-community#479)

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Commits on Apr 29, 2021

• Fix path to staged data for WE2E tests on Cheyenne (ufs-community#481)

  

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Commits on May 3, 2021

• Make the METplus tasks work on WCOSS (ufs-community#483)

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Commits on May 5, 2021

• Adding gsl gwd oro data files (ufs-community#448)

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  mdtoy

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Commits on May 19, 2021

• Add dependencies to PR template (ufs-community#489)

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  JulieSchramm

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Commits on May 24, 2021

• Fix ensemble mode stochastic pattern seed values for ad-hoc and SPP schemes. (ufs-community#466)

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  JeffBeck-NOAA

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• Modify fix-file list for Thompson scheme (ufs-community#498)

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Commits on May 25, 2021

• Update for latest version of weather model (hash 2f1c8e1), add RRFS_NA_3km pre-defined domain, update timestep and MPI settings (ufs-community#492)

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Commits on May 26, 2021

• Add echo top verification and interpolation options for different fields [into develop] (ufs-community#491)

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Commits on Jun 4, 2021

• Update FV3 namelist settings (ufs-community#422)

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Commits on Jun 8, 2021

• Make EXTRN_MDL_SYSBASEDIR_[ICS|LBCS] user-specifiable parameters (ufs-community#473)

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Commits on Jun 9, 2021

• Parameterize name of forecast model in ush/setup.sh (ufs-community#504)

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Commits on Jun 10, 2021

• Make the name of the forecast model the same as its repository (ufs-community#506)

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Commits on Jun 12, 2021

• Add flag for run_post (ufs-community#510)

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Commits on Jun 14, 2021

• Add array index to cycle_staus in launch script (ufs-community#513)

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Commits on Jun 16, 2021

• Add /atmos to HPSS path for GFS grib2 files after certain date (ufs-community#515)

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Commits on Jun 17, 2021

• Make restart_interval selectable in config.sh for warm start (ufs-community#517)

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Commits on Jun 30, 2021

• Update verification conf files to upgrade to MET 10.0, consolidate PB2NC into one file (removing conus_sfc and upper_air), and add additional line types and variables to the output based on the RRF…

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  jwolff-ncar

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Commits on Jul 2, 2021

• Update met and workflow template for wcoss (ufs-community#535)

  chan-hoo

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• Make the coupling parameter CPL in model_configure selectable (ufs-community#523)

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Commits on Jul 7, 2021

• Add inline post option to the SRW App (ufs-community#538)

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Commits on Jul 9, 2021

• Changes required to produce the diag_table file at forecast run time. (ufs-community#533)

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  JeffBeck-NOAA

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• Fix inline post issue in nco mode (ufs-community#541)

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• Edit comments, remove unneeded variables, fix indentation.

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Commits on Jul 12, 2021

• Revert "Edit comments, remove unneeded variables, fix indentation."

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Commits on Jul 13, 2021

• Streamline symlink creation (ufs-community#536)

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• WE2E test for MET verification. (ufs-community#537)

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  siwei-noaa

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Commits on Jul 14, 2021

• Modify script for 3 digit forecast length (ufs-community#549)

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Commits on Jul 15, 2021

• Update syntax for latest version of lmod. (ufs-community#542)

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  christinaholtNOAA

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• change input.nml for filter topo to fix task failure (ufs-community#547)

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Commits on Jul 16, 2021

• Copy and link NEMS field dictionary file (ufs-community#545)

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• Feature/met on hera (ufs-community#552)

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Commits on Jul 21, 2021

• Modifications to allow workflow to run to completion with GNU build on Hera (ufs-community#526)

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Commits on Jul 22, 2021

• Remove symbolic linking of diag_table when running in ensemble mode

  JeffBeck-NOAA

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• Enable fetching of (and running with) FV3GFS external model data in netcdf format from NOAA HPSS (ufs-community#555)

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Commits on Jul 23, 2021

• Add COMPILER="intel" to config.community.sh and config.nco.sh

  

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• Reorganize the WE2E (workflow end-to-end) testing system (ufs-community#531)

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• Revert "Modifications to allow workflow to run to completion with GNU build on Hera (ufs-community#526)" (ufs-community#559)

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• Remove domains_stack_size from input.yml (ufs-community#558)

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Commits on Aug 3, 2021

• develop: Verification changes from the RRFS_baseline branch that are also requ… (ufs-community#565)

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• Remove ncores_per_node from model_configure and set PPN_RUN_FCST in setup.sh (ufs-community#563)

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• Bug fixes to WE2E test "MET_verification" (ufs-community#564)

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Commits on Aug 5, 2021

• Add the pazi parameter option to the creation of the regional_esg_grid namelist; set pazi=-13.0 for the RRFS_NA_3km domain (ufs-community#567)

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Commits on Aug 9, 2021

• fix filter_topo failure when GWD orog is on (ufs-community#569)

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Commits on Aug 18, 2021

• Set up the parameters for MET on WCOSS in run_WE2E_tests.sh (ufs-community#574)

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Commits on Aug 26, 2021

• Move mrms_pull_topofhour.py from scripts/ to ush/ [develop] (ufs-community#571)

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  jwolff-ncar

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• Fixes to the "pazi" parameter to work with both GFDL and ESG grids. (ufs-community#583)

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Commits on Aug 27, 2021

• Modify post files names to match what is used in latest EMC_post (ufs-community#581)

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Commits on Sep 1, 2021

• Port verification tasks to run on Cheyenne (ufs-community#578)

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Commits on Sep 7, 2021

• Change EMC_post to UPP (ufs-community#590)

  chan-hoo

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Commits on Sep 8, 2021

• Remove unbound variables (ufs-community#592)

  chan-hoo

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Commits on Sep 11, 2021

• Update met/metplus version on wcoss cray (ufs-community#595)

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Commits on Sep 16, 2021

• Add METplus-based ensemble verification (ufs-community#575)

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Commits on Sep 22, 2021

• Update develop branch for generic linux, MacOS capability (ufs-community#539)

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Commits on Sep 23, 2021

• Add option for fv3gfs_aqm to run_post (ufs-community#585)

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Commits on Sep 28, 2021

• Remove Julie from CODEOWNERS (ufs-community#609)

  

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Commits on Oct 6, 2021

• Add do_gsl* namelist entries to YAML file for FV3_HRRR SDF. (ufs-community#597)

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Commits on Oct 7, 2021

• Fix unbound SED for cron commands in the launch script (ufs-community#606)

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Commits on Oct 19, 2021

• Adding an environment file for installing pygraf. (ufs-community#604)

  christinaholtNOAA

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Commits on Oct 22, 2021

• Modify workflow environment for orion (ufs-community#616)

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Commits on Oct 27, 2021

• increase wtime_make_orog for RRFS NA 3km on WCOSS (ufs-community#622)

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• Allow FVCOM to be used in Warm and Cold Starts (ufs-community#620)

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Commits on Nov 11, 2021

• Add support for Rocoto with generic LINUX platform (ufs-community#617)

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• Add ulimit to the task scripts for Orion (ufs-community#626)

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• Modify WE2E tests for NCO mode (ufs-community#629)

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Commits on Nov 15, 2021

• Remove rocoto for wcoss from launch script (ufs-community#636)

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Commits on Nov 17, 2021

• Rename unchanged readlink (ufs-community#638)

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• Fix -np warning by RUN_CMD_FCST (ufs-community#633)

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Commits on Nov 23, 2021

• Update template namelist files for newer ufs weather model (ufs-community#642)

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Commits on Dec 6, 2021

• Add new DEBUG variable (ufs-community#639)

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• Toggle on/off workflow tasks (ufs-community#645)

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Commits on Dec 7, 2021

• Specify the number of tasks for run_fcst on Orion (ufs-community#648)

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Commits on Dec 10, 2021

• Make cycl_freq adjustable in the configuration file (ufs-community#634)

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Commits on Dec 13, 2021

• Make thompson_mynn_lam3km ccpp suite available (ufs-community#644)

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Commits on Dec 21, 2021

• Adding variables, levels, and thresholds to ensemble vx (feature/add_ensvx_vars) (ufs-community#649)

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Commits on Jan 4, 2022

• Modify -N setting on Cray (ufs-community#655)

  chan-hoo

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Commits on Jan 5, 2022

• Add a flag for MERRA2 (ufs-community#659)

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Commits on Jan 10, 2022

• Verification modifications to conf files. (ufs-community#662)

  JeffBeck-NOAA

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Commits on Jan 13, 2022

• Refactor supported input path handling. (ufs-community#653)

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• Enhance ability to use template variables (ufs-community#650)

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• Update divergence damping parameters (ufs-community#657)

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• Add stand-alone Python data ingest tool. (ufs-community#667)

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• Fixing path to input data on Jet. (ufs-community#669)

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• Make platform information configurable. (ufs-community#666)

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• Update NOAA-EMC/regional_workflow references to ufs-community/regional_workflow (ufs-community#671)

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• Fix workflow on Cheyenne (ufs-community#672)

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• Adding hooks for running automated WE2E tests. (ufs-community#676)

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• Modify exregional_run_post to use the new fortran namelist (itag) file (ufs-community#677)

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• Update CODEOWNERS file (ufs-community#680)

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• Enhancement for the ability to output satellite products from the UPP using the CRTM (ufs-community#682)

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• Use non-login shell for launch_FV3LAM_wflow.sh; remove support for WCOSS_CRAY; fix cron capability for tcsh users on Cheyenne (ufs-community#675)

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• Fix to add missing "/" UPP namelist (ufs-community#688)

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• Fix bug for crontab feature when user's cron table is empty (ufs-community#690)

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• Feature/singularity addition (ufs-community#686)

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• Bug fixes in machine files (ufs-community#692)

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• Add NOAA cloud platforms to SRW (ufs-community#689)

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• Add SPP to the SRW App (ufs-community#685)

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• Adding python utilities in preparation for providing a python workflow generation layer (ufs-community#674)

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• Fix crontab newline issue on wcoss_dell_p3 (ufs-community#693)

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• Remove old/obsolete suites (CPT_v0, GSD_v0, GSD_SAR) from workflow (ufs-community#697)

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• Update locations of static data on Cheyenne, Hera, and Jet (ufs-community#701)

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• Add -1 to restart_interval (ufs-community#703)

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• back to original values for gfs_2017_gfdlmp (ufs-community#706)

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• Convert verification to solely use METplus configuration files (feature/ens_design_RRFS) (ufs-community#695)

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• Add missing user-defined stochastic physics options; fix stochastic physics seed generation script (ufs-community#704)

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• Add namelist option for netCDF4 when running with the 3-km NA domain; update NAM HPSS settings and WE2E tests (ufs-community#707)

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• Tweaks to allow compiler and build_env_fn to be specified in the run_WE2E_test.sh script (ufs-community#711)

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• Changed 20200304 to 20200303 in ush/mrms_pull_topofhour.py (ufs-community#712)

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• Remove unused rocoto directory in ush (ufs-community#720)

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• Fix bug for nco we2e tests on Orion; re-organize we2e input data and nco we2e tests (ufs-community#713)

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• Added stand-alone verification scripts (feature/issue_683_standaloneVX) (ufs-community#726)

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• remove machine base logic (ufs-community#727)

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• Allow user-defined file names for input template files (ufs-community#717)

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• Changes to RRFS 3- and 13-km domains, setup.sh script bug fixes, make_ics task modification, and tweaks to stochastic physics namelist settings (ufs-community#721)

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• Adding 25 km tests to Jet/Hera suites. (ufs-community#718)

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• Add a small 3km predefined grid over Indianapolis for testing (ufs-community#725)

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• Use Python tool for get_extrnl_mdl_file tasks (ufs-community#681)

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• Increase size of RRFS CONUS grid (ufs-community#724)

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• add include-style quality mark options in metplus confs (ufs-community#738)

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• Add Gaea as a supported platform for the regional_workflow (ufs-community#734)

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• Add more parameters to CSV file containing WE2E test info (ufs-community#740)

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• Update directory structure of NCO mode (ufs-community#743)

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• Default CCPP physics option is FV3_GFS_v16 (ufs-community#746)

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• Adds an alternative python workflow generation path (ufs-community#698)

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• Fix typo and crontab issue on wcoss dell in workflow python scripts (ufs-community#750)

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• Add new WE2E configs (ufs-community#748)

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• Added a fixed WoF grid and the python tool to determine the write component parameters (ufs-community#733)

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• Replace env with modulefiles in scripts (ufs-community#752)

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• WE2E script improvements for usability (ufs-community#745)

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• Standardize static data across Tier-1 platforms; fix and improve IC and LBC data retrieval (ufs-community#744)

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• Bug fixes (grid size + suppress screen output from module load) (ufs-community#756)

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• Update default SPP ISEED array in config_defaults.sh to use unique values (ufs-community#759)

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• Update workflow python scripts (ufs-community#760)

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• Change output file name of run_post to meet NCO standards (ufs-community#758)

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• Add POST_OUTPUT_DOMAIN_NAME to WE2E tests for new grids (ufs-community#763)

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• Modifications to CODEOWNERS file (ufs-community#757)

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• Adding a python utility for summarizing compute. (ufs-community#769)

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• Add github actions for python unittests. (ufs-community#747)

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• Update sample script for NCO mode (ufs-community#771)

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• Feature/noaacloud (ufs-community#767)

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• removed cheyenne-specific crontab editing section (ufs-community#773)

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• Pin down hera miniconda3 module file version. (ufs-community#770)

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• update staged data dir (ufs-community#774)

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• update IC/LBC file paths to match new IC/LBC file structure (ufs-community#766)

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• add a machine file for MacOS (ufs-community#777)

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• Add columns for relative test and time step to CSV file containing WE2E test info (ufs-community#776)

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• Bug fix for calculation of number of time steps for a given WE2E test. (ufs-community#782)

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• Bugfix: Pass domain name to python plotting scripts (ufs-community#783)

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• Update scripts to work with the latest hashes of UFS_UTILS and UPP (ufs-community#775)

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• adding new e2e tests (ufs-community#792)

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Commits on Jun 23, 2022

• [develop] Update scripts to run with the latest hash of ufs weather model (ufs-community#796)

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• [develop] Update MET/METplus versions and configuration files (ufs-community#779)

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• add a linux.sh machine file (a template) (ufs-community#798) (ufs-community#803)

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• [develop] Rename variables related to GFDLgrid-type grids (ufs-community#787)

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• Remove un-readable path to systemdir on Hera. (ufs-community#806)

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• [develop] Add MET/METplus to Jet (ufs-community#799)

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• Remove RRFS_v1alpha suite (ufs-community#809)

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• [develop]: Remove shell workflow. (ufs-community#764)

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• Remove wcoss_dell_p3 from workflow (ufs-community#810)

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• Replace deprecated NCAR python environment with conda on Cheyenne (ufs-community#812)

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• Fix issue on get_extrn_lbcs when FCST_LEN_HRS>=40 with netcdf (ufs-community#814)

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• Fixes a problem with adding crontabline when the existing lines have single quotes. (ufs-community#816)

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• Bugfix for ensemble+stochastic physics issue and new WE2E test case for stochastic physics. (ufs-community#819)

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• Adding data ingest for global ensembles. (ufs-community#805)

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• fixed typo (ufs-community#822)

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Commits on Aug 18, 2022

• Bugfix with machine file wrapper. (ufs-community#823)

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Commits on Aug 25, 2022

• Mods to METplus vx to address multiple issues (ufs-community#826)

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• Use new MET/METplus installs on Gaea (ufs-community#824)

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• Merge remote-tracking branch 'rw/develop' into develop

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• Remove regional_workflow from Externals.cfg

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• Modifications to allow WE2E tests to run in new merged structure.

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