Release 0.7.0 · SBC-Utrecht/pytom-match-pick

This is a big one! And probably containts the last major api changes before the 1.0.0 release.

Wiki/tutorial will soon be updated to correspond with latest changes.

Main updates

Thanks to @sroet the package now supports arbitrary angular sampling generation via healpix. This now makes it possible to provide a particle diameter as input and let pytom-match-pick figure out the correct angular sampling!
A bug was fixed in the particle symmetry option as it was not applied to the correct euler angle.
CTF parameters can now only be applied in pytom_match_template.py and no longer for template creation. This makes input more consistent.
Particle lists can be written out to be Relion5 compatible: centered coordinates in angstrom and proper star file column names.
A tomogram mask can be provided during template matching and will skip subvolumes where the mask is empty.

Readme illustration by @McHaillet in #156
Phase plate ctf and argparse grouping by @McHaillet in #157
default value phase shift entry point by @McHaillet in #159
Update cupy requirements by @sroet in #167
wait longer to prevent leaked processes by @McHaillet in #168
small speedboost by precalculating conjugation by @McHaillet in #165
expose tophat kernel connectivity and make n-false-postives a float by @McHaillet in #166
make template non-symmetrical for template matching test to prevent race condition by @McHaillet in #169
refactor volume splitting by @sroet in #170
auto generate sampling angles by @sroet in #163
Ctf rework by @McHaillet in #174
Relion5 compatibility by @McHaillet in #178
Center of mass fix by @McHaillet in #179
calculate angular search from particle diameter by @McHaillet in #181
fix symmetry bug by @sroet in #184
phase randomization score map correction by @McHaillet in #182
pre-commit with ruff by @McHaillet in #183
Add tomogram mask option for template matching by @sroet in #185

Full Changelog: 0.6.0...0.7.0