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Tags: SBC-Utrecht/pytom-match-pick

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0.7.9

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Restructure release (#242)

* debug pypi workflow

* let release run on test branch

* drop environment (should fail pypi release)

* start with /home instead of the whole thing

* split out ls commands

* more lses

* rewrite do-release.yml to split out steps

* Update artifact pull name

* convert to mergable state

* Update version to 0.7.9

* actually pull test codes as well

0.7.8

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dont publish attestation to pypi (#240)

* dont publish attestation to pypi

* update version

0.7.7

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fix action to v1.11 (#239)

* fix pypa action to v1.11

* Update pyproject.toml

0.7.6

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set to 1.12 instead of 1.12.1 (#238)

* set to 1.12 instead of 1.12.1

* Update pyproject.toml

0.7.5

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test if version update fixes release to test-pypi (#237)

* test if version update fixes release to test-pypi

* update version number

0.7.4

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Relion5 input (#229)

* add relion5 meta data input entry and parsing of the meta data

* fix arg name type

* fix argument name

* add switch to remove rec_

* remove: temporary comment

* add: test data for relion5 tilt series metadata

* add: entry point test for relion5 metadata input

* add: test for io function

* fix:string

* make sure defocus handedness is also parsed and update tests accordingly

* update typing

* be helpful

* simplofy comment

* update version number because of command line input change

* Apply suggestions from code review

Co-authored-by: Sander Roet <[email protected]>

* to the defocus multiplication in one go

* make sure junk name removal is hit

* run test_io through ruff

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Co-authored-by: Sander Roet <[email protected]>

0.7.2

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Enable 16 bit output (#222)

* don't catch float16 anymore in writers

* add option to alter return type to TMJob and add option to entry point

* fix typo

* add test for float16 mrcfile load and write

* fix dtype json cycle

* reshape random array instead

* try to be less clever

* also change attribute name in setup of the test

* numpy dtype classes are strange

* our code only returns arrays without the wrapper

* unittest can't handle numpy arrays...

* also test altered warning

* add test half-precision tmjob

* move angle volume back to default 32

* fix accidental paste

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Co-authored-by: Marten Chaillet <[email protected]>

0.7.1

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bug fix: add int type for rng seed (#192)

* bug fix: add int type for rng seed

* fix: update the version for this bug fix

* update entry point test with rng seed

* Fix: remove double line

Co-authored-by: Sander Roet <[email protected]>

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Co-authored-by: Sander Roet <[email protected]>

0.7.0

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Add tomogram mask option for template matching (#185)

* Add tomogram mask option in the volume control for template matching

* implement mask check during volume splitting

* use tomogram mask during extraction as well

* update entry point documentation

* fix typo

* reword entry point documentation

* Name the tests that need to be added

* add tests for the volume splitting and the extraction logic

* fix added tests

* Update tests/test_tmjob.py

Co-authored-by: Marten Chaillet <[email protected]>

* test validity of the tomogram mask already in the tmjob init

* it is a tomogram mask, not a template mask...

* Update src/pytom_tm/tmjob.py

Co-authored-by: Marten Chaillet <[email protected]>

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Co-authored-by: Marten Chaillet <[email protected]>

0.6.0

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Update README.md (#154)

point to discussions page for discussions