Syncopy 2022.12

New Features

• descriptive statistics: spy.mean, spy.var, spy.std and spy.median
• new high-level function spy.timelockanalysis
• inter trial coherence: spy.itc
• PSTH method: spy.spike_psth
• added Welch's method to spy.freqanalysis
• connectivity analysis from SpectralData input
• time dependent coherence
• .info entries for Granger and FOOOF analyses with fixed metadata labels

Changes

• spy.selectdata now works with latency and frequency instead of toi/toilim, foi/foilim like ft_selectdata
• a valid latency selection will always return timelocked data

Fixes

• user selections don't get silently wiped by high-level function calls like spy.freqanalysis #332
• SpikeData slow loading issue #360
• mempory consumption of trial averaging, both sequential and parallel #380
• custom dimord support for plotting #349
• updated dependencies, support for Python >= 3.8 to allow default conda environments w/o Python pinning #363
• nwb reader improved memory footprint

Detailed Changes

• Dev merge by @tensionhead in #322
• re-sync version and CI .yml by @tensionhead in #334
• FIX: Construct trialdefinition of resampled data by @tensionhead in #337
• Update from Dev by @tensionhead in #338
• 140 multiple outputs by @dfsp-spirit in #321
• PSTH by @tensionhead in #339
• 340 interface additional cf returns by @tensionhead in #343
• Psth tests by @tensionhead in #347
• Seq stats premerge by @dfsp-spirit in #350
• 332 inplace sel by @dfsp-spirit in #346
• Fix poetry version by @dfsp-spirit in #352
• CHG: Add versions for all packages listed in pyproject.toml by @dfsp-spirit in #354
• FIX: Equality operator branching by @tensionhead in #362
• 344 rng by @dfsp-spirit in #355
• 349 plotting does not support custom dimords by @tensionhead in #365
• 364 rewire connectivity analysis by @tensionhead in #366
• 341 implement sequential statistics mean stddev for syncopydata by @tensionhead in #372
• Dev by @tensionhead in #374
• WIP: add function to rearrange metadata labels by @dfsp-spirit in #356
• Quick fix: spyvalueerrors by @dfsp-spirit in #377
• Revert ACME to optional dependency, introduce fallback parallel processing by @tensionhead in #373
• 287 wavelet cross spectra by @tensionhead in #375
• Timelockanalysis + PSTH finish by @tensionhead in #381
• 384 deprecate toitoilim and foifoilim for selectdata by @tensionhead in #385
• Bump certifi from 2022.6.15 to 2022.12.7 by @dependabot in #389
• memory-improvements-nwb by @KatharineShapcott in #386
• 367 inter trial coherence itc by @tensionhead in #388
• 368 welchs method by @dfsp-spirit in #383
• Dev merge for 2022.12 release by @tensionhead in #390
• 387 fix spycleanup by @dfsp-spirit in #391
• Fix win test by @dfsp-spirit in #396
• Release prep merge by @tensionhead in #397
• 392 serializable cfg entries by @kajal5888 in #393
• Last minute update by @tensionhead in #398

Full Changelog: v2022.08...v2022.12