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This seems to be specific to spike data, here I'm looping through all the data types in a folder and most times are similar:
0.3.dev187
ADC
CPU times: user 7.22 ms, sys: 4.03 ms, total: 11.2 ms
Wall time: 25.6 ms
events
CPU times: user 264 ms, sys: 3.99 ms, total: 268 ms
Wall time: 271 ms
lfp
CPU times: user 2.99 ms, sys: 1.02 ms, total: 4.01 ms
Wall time: 6.57 ms
raw
CPU times: user 4.83 ms, sys: 4 µs, total: 4.84 ms
Wall time: 16.9 ms
spikes
CPU times: user 9.21 s, sys: 214 ms, total: 9.42 s
Wall time: 9.46 s
2022.8.1a0
ADC
CPU times: user 5.93 ms, sys: 0 ns, total: 5.93 ms
Wall time: 7.25 ms
events
CPU times: user 4.68 ms, sys: 713 µs, total: 5.4 ms
Wall time: 5.39 ms
lfp
CPU times: user 2.35 ms, sys: 1.95 ms, total: 4.3 ms
Wall time: 4.17 ms
raw
CPU times: user 3.35 ms, sys: 2.06 ms, total: 5.41 ms
Wall time: 4.88 ms
spikes
CPU times: user 160 ms, sys: 19.9 ms, total: 180 ms
Wall time: 181 ms
Files sizes looks like this:
To Reproduce
Switch to the current dev branch and load in spike data.
Expected behavior
Loading time stays the same as previously.
System Profile:
OS: ESI cluster
Please paste the output of the following command here
importsyncopyasspy; spy.AnalogData().log
>>> SyNCopy v. 0.3.dev187 <<<
Created: Fri Oct 7 18:29:01 2022
System Profile:
3.8.13 (default, Mar 28 2022, 11:38:47)
[GCC 7.5.0]
ACME: 0.21
Dask: 2021.10.0
NumPy: 1.21.2
SciPy: 1.7.3
--- LOG ---
|=== shapcottk@esi-svhpc23: Fri Oct 7 18:29:02 2022 ===|
__init__: created AnalogData object
Additional Information
I don't notice any change in the memory usage and it's not specific to loading with tags.
The text was updated successfully, but these errors were encountered:
tensionhead
added
the
Critical Bug
A critical error that either complete breaks (parts of) the package or causes erroneous calculation
label
Oct 8, 2022
So the problem at hand got solved, however we found unexpected (nTrials^2 + nTrials) scaling of that expensive, and with the fix avoided again, equality check here
We are also wondering why for a simple init of AnalogData the __eq__ operator gets into action in the first place.
Describe the bug
Went from 180 ms to 9.43 seconds!
This seems to be specific to spike data, here I'm looping through all the data types in a folder and most times are similar:
Files sizes looks like this:
To Reproduce
Switch to the current dev branch and load in spike data.
Expected behavior
Loading time stays the same as previously.
System Profile:
OS: ESI cluster
Please paste the output of the following command here
Created: Fri Oct 7 18:29:01 2022
System Profile:
3.8.13 (default, Mar 28 2022, 11:38:47)
[GCC 7.5.0]
ACME: 0.21
Dask: 2021.10.0
NumPy: 1.21.2
SciPy: 1.7.3
--- LOG ---
|=== shapcottk@esi-svhpc23: Fri Oct 7 18:29:02 2022 ===|
Additional Information
I don't notice any change in the memory usage and it's not specific to loading with tags.
The text was updated successfully, but these errors were encountered: