Releases: cBioPortal/cbioportal
Releases · cBioPortal/cbioportal
v5.3.12
✨ Enhancements
- Timeline: links if event popover should open in new window when signaled @alisman cBioPortal/cbioportal-frontend#4643
🐛 Bug Fixes
- Fix custom sample list selection @alisman cBioPortal/cbioportal-frontend#4644
- Fix infinite reload of sample lists @alisman cBioPortal/cbioportal-frontend#4641
- Fix duplicate SV intragenic records @fuzhaoyuan cBioPortal/cbioportal-frontend#4642
⚙️ REST API Changes
🕵️♀️ Full commit logs
- Backend: v5.3.11...v5.3.12
- Frontend: cBioPortal/cbioportal-frontend@v5.3.11...v5.3.12
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning
Contributors
alisman, BasLee, and fuzhaoyuan
Assets 2
v5.3.11
✨ Enhancements
- Feature/ch/10184 support patient filters sent via postdata @haynescd (cbioportal-frontend#4635)
📘 Documentation
- add statistical tests in GC in FAQ @jjgao (#10199)
- Update web-API-and-Clients.md @karissawhiting (#10209)
- Adding new features news @dippindots (#10149)
- Add AACR GENIE BPC tutorial videos playlist @ritikakundra (#10215)
🕵️♀️ Full commit logs
- Backend: v5.3.10...v5.3.11
- Frontend: cBioPortal/cbioportal-frontend@v5.3.10...v5.3.11
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.10
✨ Enhancements
- Hide reVUE when there is no reVUE mutations in the query @leexgh (cbioportal-frontend#4637)
- Study view KM plot: Updating tooltip and increasing threshold for compact mode @dippindots (cbioportal-frontend#4636)
🐛 Bug Fixes
- Fix add chart button so that it never overlaps tabs @alisman (cbioportal-frontend#4627)
👷♀️ Testing, Configuration & Deployment
- Fix localdb @alisman (cbioportal-frontend#4634)
🧰 Maintenance
- Remove redundant makeObservable call @aditygrg2 (cbioportal-frontend#4633)
🕵️♀️ Full commit logs
- Backend: v5.3.9...v5.3.10
- Frontend: cBioPortal/cbioportal-frontend@v5.3.9...v5.3.10
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.9
🐛 Bug Fixes
- Fix double click on gene query icon in study view @alisman (cbioportal-frontend#4626)
🎨 Style Tweaks
- Adjust toast settings on studyview @alisman (cbioportal-frontend#4628)
📘 Documentation
- extend File-Formats.md with mutational signature datatype @MatthijsPon (#10172)
🖊️ Data Importer & Validator
🧰 Maintenance
- ⚡ Update GenomeNexus Api sync @haynescd (cbioportal-frontend#4618)
🕵️♀️ Full commit logs
- Backend: v5.3.8...v5.3.9
- Frontend: cBioPortal/cbioportal-frontend@v5.3.8...v5.3.9
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.8
✨ Enhancements
- Add new "queue" gene icon to study view gene tables @alisman (cbioportal-frontend#4617)
- ✨ Add PatientIdentifiers URL Parameter @haynescd (cbioportal-frontend#4616)
- Add TCGA Pancan pathways to query selector @inodb (cbioportal-frontend#4610)
🐛 Bug Fixes
- Add profile filtering when adding Generic Entity IDs in Oncoprint @oplantalech @alisman (cbioportal-frontend#4596)
👷♀️ Testing, Configuration & Deployment
- update screenshots after oncokb change @alisman (cbioportal-frontend#4623)
- Fix integration test @dippindots (#10193)
🧰 Maintenance
- Update svg2pdf to fix broken Overlap charts download @dippindots (cbioportal-frontend#4601)
🕵️♀️ Full commit logs
- Backend: v5.3.7...v5.3.8
- Frontend: cBioPortal/cbioportal-frontend@v5.3.7...v5.3.8
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.7
🧬 Features
- Structural variants tab on results view (phase 1) @fuzhaoyuan (cbioportal-frontend#4588)
✨ Enhancements
- 🔧 Add configurability for StudyDownloadUrl @haynescd (cbioportal-frontend#4602)
- Filter Clinical Attribute Charts when priority is -1 @haynescd (cbioportal-frontend#4598)
- Add a configurable legend to timeline tracks @alisman (cbioportal-frontend#4593)
🐛 Bug Fixes
- Correct sample icon coloring on the patient view @gblaih (cbioportal-frontend#4613)
- Fix broken civic links @onursumer (cbioportal-frontend#4612)
- Fix study tag search when no studies available @BasLee (#10164)
👷♀️ Testing, Configuration & Deployment
- Disable keycloak caching for localdb tests @dippindots (cbioportal-frontend#4615)
📘 Documentation
- Documentation markdown fixes @justinjao (#10186)
- add jeremy to about page @tmazor (#10166)
🧰 Maintenance
- Add dsnparse Python requirement @pvannierop (#10165)
🕵️♀️ Full commit logs
- Backend: v5.3.6...v5.3.7
- Frontend: cBioPortal/cbioportal-frontend@v5.3.6...v5.3.7
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.6
🧬 Features
- Add revue icon for revue variants @leexgh (cbioportal-frontend#4589)
✨ Enhancements
- Download data from study view treatment tables @Player256 (cbioportal-frontend#4595)
- 🔧 Add Configurable Param for max number of samples in study vi… @haynescd (cbioportal-frontend#4587)
- 🔧 Add StudyDownloadUrl to portal.properties @haynescd (#10143)
🐛 Bug Fixes
- Import image as source for revue logo @leexgh (cbioportal-frontend#4606)
- Check undefined revue for mutation type and protein change column @leexgh (cbioportal-frontend#4605)
- Check undefined annotation_summary when fetching revue @leexgh (cbioportal-frontend#4604)
🏎 Performance Tweaks
- Study view km plot optimization @dippindots (cbioportal-frontend#4520)
📘 Documentation
🎨 Style Tweaks
- Optimize Vue icon image @alisman (cbioportal-frontend#4608)
🕵️♀️ Full commit logs
- Backend: v5.3.5...v5.3.6
- Frontend: cBioPortal/cbioportal-frontend@v5.3.5...v5.3.6
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.5
🐛 Bug Fixes
- Filter SV by custom driver annotations in oncoprint and study page @BasLee (cbioportal-frontend#4552)
- Fix oncokb card for intragenic gene in mutation table @alisman (cbioportal-frontend#4594)
- 🐛 Add Missing Operations Button Txt to Clinical Event Type Table @haynescd (cbioportal-frontend#4592)
👷♀️ Testing, Configuration & Deployment
🎨 Style Tweaks
- Tweak style of oncoprint controls @aditygrg2 (cbioportal-frontend#4548)
🧰 Maintenance
- Update api clients @alisman (cbioportal-frontend#4591)
🕵️♀️ Full commit logs
- Backend: v5.3.4...v5.3.5
- Frontend: cBioPortal/cbioportal-frontend@v5.3.4...v5.3.5
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
v5.3.4
🧬 Enhancements
- Impl. study search on Query Page using 'study tags' @BasLee cBioPortal/cbioportal-frontend#4571
- Improve Oncoprint Add-track UI @aditygrg2 cBioPortal/cbioportal-frontend#4542
- Add studyId to CancerStudyTag entity @BasLee (#10116)
🐛 Bug Fixes
- Hide defunct download tab on home page @gblaih cBioPortal/cbioportal-frontend#4585
- Do not call next study view filter when no samples left @pvannierop (#10124)
🧰 Maintenance
- Update yarn lock file to fix build error @alisman cBioPortal/cbioportal-frontend#4584
- [Snyk] Security upgrade xml2js from 0.4.23 to 0.5.0 @oplantalech cBioPortal/cbioportal-frontend#4578
📘 Documentation
- Update database migration documentation @dippindots (#10115)
🕵️♀️ Full commit logs
- Backend: v5.3.3...v5.3.4
- Frontend: cBioPortal/cbioportal-frontend@v5.3.3...v5.3.4
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
Contributors
alisman, pvannierop, and 5 other contributors
Assets 2
v5.3.3
🧬 Features
- Disable autocommit and manually commit filters in study view @BasLee (cbioportal-frontend#4502)
🐛 Bug Fixes
- Disable oncokb fetch from MutationMapper when show_oncokb config is off @alisman (cbioportal-frontend#4572)
👷♀️ Testing, Configuration & Deployment
- Update circleci config to parametrize Workflow for e2e tests @haynescd (cbioportal-frontend#4570)
⚙️ REST API Changes
- fix swagger page validation errors @jfkonecn (#10101)
- Include driver filter in sv count query @BasLee (#10092)
📘 Documentation
- Update news.md @sbabyanusha (#9994)
🕵️♀️ Full commit logs
- Backend: v5.3.2...v5.3.3
- Frontend: cBioPortal/cbioportal-frontend@v5.3.2...v5.3.3
🏷Notes on versioning and release procedure
https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning
