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Merge new changes in pydata master#4

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phausamann merged 108 commits intophausamann:masterphausamann/xarray:masterfrom pydata:masterpydata/xarray:masterCopy head branch name to clipboardMar 7, 2019

+7,832-3,433

Commits

Commits on Nov 16, 2018

• add missing , and article in error message (#2557)

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  gerritholl

  authored and

  Joe Hamman

  committed
  70e9eb8

Commits on Nov 24, 2018

• DOC: fix computation.rst (#2567)

  shoyer

  authored
  57fdcc5

• Return slices when possible from CFTimeIndex.get_loc() (#2569)

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  shoyer

  authored
  9d572a5

Commits on Nov 25, 2018

• python setup.py test now works by default (#2573)

  

  horta

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  shoyer

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  ecbf91f

Commits on Nov 26, 2018

• DOC: remove example using Dataset.T (#2572)

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  shoyer

  authored and

  dcherian

  committed
  a2a448d

Commits on Nov 27, 2018

• Concat docstring typo (#2577)

  

  max-sixty

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  shoyer

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  483b8a0

Commits on Nov 28, 2018

• Fix typo (#2578)

  

  davidbrochart

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  shoyer

  committed
  22a5763

• fix examples (#2581)

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  dcherian

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  shoyer

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  0d6056e

Commits on Dec 4, 2018

• Zarr consolidated (#2559)

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  rabernat

  authored and

  shoyer

  committed
  3ae93ac

Commits on Dec 9, 2018

• Minor update to PR template (#2596)

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  shoyer

  authored
  77634d4

Commits on Dec 11, 2018

• Fix h5netcdf saving scalars with filters or chunks (#2591)

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  mraspaud

  authored and

  shoyer

  committed
  53746c9

• Add dayofyear and dayofweek accessors (#2599)

  

  spencerkclark

  authored and

  shoyer

  committed
  5d8ef5f

• Fix wrong error message in interp() (#2598)

  

  lumbric

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  shoyer

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  6881503

Commits on Dec 12, 2018

• Temporarily mark dask-dev build as an allowed failure (#2602)

  shoyer

  authored
  23483ad

• use keep_attrs in binary operations II (#2590)

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  MBlaschek

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  shoyer

  committed
  82789bc

Commits on Dec 13, 2018

• Bump cftime version in doc environment (#2604)

  

  spencerkclark

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  shoyer

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  cbb32e1

• Support HighLevelGraphs (#2603)

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  mrocklin

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  shoyer

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  2223445

• Feature: N-dimensional auto_combine (#2553)

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  TomNicholas

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  shoyer

  committed
  9e8707d

Commits on Dec 14, 2018

• fix a few typos in rst files (#2607)

  

  visr

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  max-sixty

  committed
  09494eb

Commits on Dec 15, 2018

• Fix parsing '_Unsigned' attribute (#2584)

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  dcherian

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  shoyer

  committed
  f8cced7

Commits on Dec 17, 2018

• doc fixes. (#2611)

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  dcherian

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  shoyer

  committed
  090564c

Commits on Dec 18, 2018

• Remove meaningless tz argument in cftime_range (#2613)

  

  spencerkclark

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  shoyer

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  a4c9ab5

Commits on Dec 19, 2018

• Remove failing Appveyor Python 2.7 32-bit build (#2617)

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  shoyer

  authored
  30288e8

• .resample now supports loffset. (#2608)

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  dcherian

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  shoyer

  committed
  778ffc4

• CF: also decode time bounds when available (#2571)

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  fmaussion

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  dcherian

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  57348ab

Commits on Dec 20, 2018

• FIX Don't raise a deprecation warning for xarray.ufuncs.{angle,iscomplex} (#2615)

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  rth

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  shoyer

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  a15587d

Commits on Dec 22, 2018

• Get 0d slices of ndarrays directly from indexing (#2625)

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  danielwe

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  shoyer

  committed
  ce52341

Commits on Dec 23, 2018

• added some logic to deal with rasterio objects in addition to filepaths (#2589)

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  scottyhq

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  shoyer

  committed
  9352b3c

• Close files when CachingFileManager is garbage collected (#2595)

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  shoyer

  authored
  c2ce5ea

Commits on Dec 24, 2018

• Fix multiindex selection (#2621)

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  fujiisoup

  authored and

  shoyer

  committed
  b5059a5

• Fix failure in time encoding for pandas < 0.21.1 (#2630)

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  spencerkclark

  authored and

  shoyer

  committed
  7fcb80f

• Allow passing of positional arguments in apply for Groupby objects (#2413)

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  maaleske

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  shoyer

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  d8d87d2

Commits on Dec 25, 2018

• Flake fixed (#2629)

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  max-sixty

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  shoyer

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  2667deb

Commits on Dec 27, 2018

• fill_value in shift (#2470)

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  max-sixty

  authored and

  shoyer

  committed
  85ded91

Commits on Dec 28, 2018

• silence import warning (#2635)

  max-sixty

  authored
  bc5558e

• Fix dayofweek and dayofyear attributes from dates generated by cftime_range (#2633)

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  spencerkclark

  authored and

  shoyer

  committed
  a8e5002

Commits on Dec 30, 2018

• Add flake check to travis (#2632)

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  max-sixty

  authored and

  shoyer

  committed
  1545b50

• Source encoding always set when opening datasets (#2626)

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  TomNicholas

  authored and

  shoyer

  committed
  250b19c

• DOC: fix docstrings and doc build for 0.11.1

  shoyer

  committed
  d1d2ece

• revert to dev version

  shoyer

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  e95f765

Commits on Dec 31, 2018

• TST: silence warnings from bottleneck (#2638)

  shoyer

  authored
  11e6aac

Commits on Jan 2, 2019

• DEP: drop python 2 support and associated ci mods (#2637)

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  Joe Hamman

  authored and

  shoyer

  committed
  faacc8d

Commits on Jan 3, 2019

• BUG: pytest-runner no required for setup.py (#2643)

  shoyer

  authored
  c62c4fa

• Use built-in interp for interpolation with resample (#2640)

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  spencerkclark

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  shoyer

  committed
  49731d4

• DOC: document v0.11.2 release

  shoyer

  committed
  cb5ef42

• Switch whats-new for 0.11.2 -> 0.11.3

  shoyer

  committed
  a70b3c4

• Use pycodestyle for lint checks. (#2642)

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  shoyer

  authored
  28123bb

Commits on Jan 4, 2019

• ENH: switch Dataset and DataArray to use explicit indexes (#2639)

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  shoyer

  authored
  06244df

Commits on Jan 5, 2019

• Change an == to an is. Fix tests so that this won't happen again. (#2648)

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  WeatherGod

  authored and

  shoyer

  committed
  ee44478

• Convert ref_date to UTC in encode_cf_datetime (#2651)

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  spencerkclark

  authored and

  shoyer

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  85f88e7

Commits on Jan 6, 2019

• revise top-level package description (#2430)

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  rabernat

  authored and

  dcherian

  committed
  a0bbea8

• Improve test for GH 2649 (#2654)

  

  spencerkclark

  authored and

  shoyer

  committed
  dba299b

• Added Coarsen (#2612)

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  fujiisoup

  authored and

  shoyer

  committed
  ede3e01

Commits on Jan 8, 2019

• Type checking with mypy (#2655)

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  shoyer

  authored
  6963164

• Remove broken Travis-CI builds (#2661)

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  shoyer

  authored
  6795fd0

Commits on Jan 11, 2019

• DOC: refresh "Why xarray" and shorten top-level description (#2657)

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  shoyer

  authored
  d4c4682

Commits on Jan 13, 2019

• xfail cftimeindex multiindex test (#2669)

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  shoyer

  authored
  44a8c97

Commits on Jan 15, 2019

• Fix test failures with numpy=1.16 (#2675)

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  shoyer

  authored
  f13536c

Commits on Jan 16, 2019

• Update README.rst (#2682)

  

  max-sixty

  authored and

  shoyer

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  5a96460

Commits on Jan 17, 2019

• Hotfix for #2662 (#2678)

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  TomNicholas

  authored and

  shoyer

  committed
  dc87dea

Commits on Jan 18, 2019

• Detailed report for testing.assert_equal and testing.assert_identical (#1507)

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  benbovy

  authored
  1d0a2bc

• try no rasterio in py36 env (#2691)

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  Joe Hamman

  authored and

  max-sixty

  committed
  385b36c

Commits on Jan 19, 2019

• Update asv.conf.json (#2693)

  

  TomAugspurger

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  shoyer

  committed
  ec255eb

Commits on Jan 21, 2019

• to_dict without data (#2659)

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  rabernat

  authored
  a7d55b9

Commits on Jan 23, 2019

• Config for closing stale issues (#2684)

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  max-sixty

  authored
  1e67c23

• add line break to message posted (#2698)

  max-sixty

  authored
  e53f21c

• Update indexing.rst (#2700)

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  pythonweb2

  authored and

  Joe Hamman

  committed
  ddacf40

Commits on Jan 24, 2019

• stale requires a label (#2701)

  max-sixty

  authored
  79fa060

Commits on Jan 25, 2019

• Remove py2 compat (#2645)

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  Joe Hamman

  authored and

  shoyer

  committed
  aabda43

• BUG: ensure indexes are reset when coords are modified (#2707)

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  shoyer

  authored
  cc5015a

• Print full environment fron conf.py (#2709)

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  shoyer

  authored
  2e99c7d

Commits on Jan 26, 2019

• Update environment for doc build (#2708)

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  shoyer

  authored
  8ca8efe

Commits on Jan 27, 2019

• DOC: refresh whats-new for 0.11.3 / 0.12.0 (#2718)

  

  shoyer

  authored and

  Joe Hamman

  committed
  882deac

• Fix test failures / warnings for pandas 0.24 (#2720)

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  shoyer

  authored
  620b946

Commits on Jan 30, 2019

• Bugfix for line plot axes (#2726)

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  TomNicholas

  authored and

  shoyer

  committed
  e8bf4bf

• Enable subtracting a scalar cftime.datetime object from a CFTimeIndex (#2672)

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  spencerkclark

  authored and

  dcherian

  committed
  fd2552a

• Refactor plot utils (#2670)

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  dcherian

  authored
  37a947a

• silence a couple of warnings (#2727)

  max-sixty

  authored
  5527f69

Commits on Jan 31, 2019

• improve error message for invalid encoding (#2730)

  

  Joe Hamman

  authored and

  shoyer

  committed
  ce3ef3a

• ENH: resample methods with tolerance (#2716)

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  observingClouds

  authored and

  shoyer

  committed
  3cc0d22

• Implement integrate (#2653)

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  fujiisoup

  authored and

  shoyer

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  4923039

Commits on Feb 1, 2019

• deprecate compat & encoding (#2703)

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  max-sixty

  authored
  d634f64

Commits on Feb 2, 2019

• dropna() for a Series indexed by a CFTimeIndex (#2734)

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  spencerkclark

  authored and

  shoyer

  committed
  a1ff90b

• add tests for handling of empty pandas objects in constructors (#2735)

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  Joe Hamman

  authored and

  shoyer

  committed
  0da9d62

Commits on Feb 3, 2019

• CFTimeIndex Resampling (#2593)

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  jwenfai

  authored and

  shoyer

  committed
  d8ff079

• remove bottleneck dev build from travis, this test env was failing to build (#2736)

  

  Joe Hamman

  authored and

  shoyer

  committed
  2ef3f0b

Commits on Feb 4, 2019

• Reenable cross engine read write netCDF test (#2739)

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  shoyer

  authored and

  Joe Hamman

  committed
  053aed1

• remove xfail from test_cross_engine_read_write_netcdf4 (#2741)

  

  Joe Hamman

  authored
  27cf53f

Commits on Feb 6, 2019

• Refactor (part of) dataset.py to use explicit indexes (#2696)

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  shoyer

  authored
  e677b7a

• Fix CRS being WKT instead of PROJ.4 (#2715)

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  djhoese

  authored and

  shoyer

  committed
  0c73a38

Commits on Feb 7, 2019

• reintroduce pynio/rasterio/iris to py36 test env (#2738)

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  Joe Hamman

  authored
  1abc45b

• BUG: Pass kwargs to the FileManager for pynio engine (#2380) (#2732)

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  jonmjoyce

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  shoyer

  committed
  0dfc0e6

• remove references to cyordereddict (#2750)

  

  Joe Hamman

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  shoyer

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  e097763

Commits on Feb 8, 2019

• enable internal plotting with cftime datetime (#2665)

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  Julius Busecke

  authored and

  dcherian

  committed
  8a1a8a1

• Fix mypy errors (#2753)

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  shoyer

  authored
  6d20766

Commits on Feb 11, 2019

• fix datetime_to_numeric and Variable._to_numeric (#2668)

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  fujiisoup

  authored
  4cd56a9

• Fix name loss when masking (#2749)

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  yohai

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  shoyer

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  07cfc5a

Commits on Feb 12, 2019

• add h5netcdf+dask tests (#2737)

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  Joe Hamman

  authored and

  shoyer

  committed
  fd9b0b0

• Update computation.py to use Python 3 function signatures (#2756)

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  shoyer

  authored
  2089382

• typo in whats_new (#2763)

  

  yohai

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  max-sixty

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  17fa64f

Commits on Feb 15, 2019

• 'standard' now refers to 'gregorian' in cftime_range (#2771)

  

  spencerkclark

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  shoyer

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  cd8e370

Commits on Feb 19, 2019

• Bugfix/reduce no axis (#2769)

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  TomNicholas

  authored and

  shoyer

  committed
  57cd76d

• Add use_cftime option to open_dataset (#2759)

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  spencerkclark

  authored
  612d390

Commits on Mar 2, 2019

• Quarter offset implemented (base is now latest pydata-master). (#2721)

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  jwenfai

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  spencerkclark

  committed
  627a881

Commits on Mar 3, 2019

• Add Dataset.drop_dims (#2767)

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  kmsquire

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  shoyer

  committed
  e8eb83b

Commits on Mar 4, 2019

• Improve name concat (#2792)

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  TomNicholas

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  shoyer

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  c33dab2

Commits on Mar 5, 2019

• Don't use deprecated np.asscalar() (#2800)

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  TimoRoth

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  shoyer

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  0c534b0

Commits on Mar 6, 2019

• Add support for cftime.datetime coordinates with coarsen (#2778)

  

  spencerkclark

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  fujiisoup

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  c770eec