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22 Open 8 Closed
22 Open 8 Closed
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Issues list

Begin versioning the repo and creating repo-level git tags corresponding to versions enhancement New feature or request
#124 opened Mar 28, 2024 by keller-mark
Proposal: python package with docker container wrapper
#119 opened Apr 13, 2023 by keller-mark
2
sprm-to-anndata and sprm-to-json shouldn't depend on cell polygons from SPRM
#104 opened Jul 8, 2022 by mruffalo
2 tasks
3
Cannot install cwltool because ... rdflib-jsonld version
#89 opened Mar 2, 2022 by mccalluc
Upgrade Debain on Docker Images
#80 opened Aug 17, 2021 by ilan-gold
Stop making Arrow intermediates
#69 opened Apr 2, 2021 by mccalluc
Determine the optimal gene ordering after hierarchical clustering
#57 opened Sep 15, 2020 by keller-mark
confirm that image pyramid pipeline does not crop images incorrectly
#56 opened Aug 1, 2020 by ngehlenborg
1
Handle code duplication enhancement New feature or request
#43 opened Jun 19, 2020 by mccalluc
Hierarchically Cluster Cells enhancement New feature or request
#36 opened Jun 8, 2020 by ilan-gold
Add doctest enhancement New feature or request
#35 opened Jun 8, 2020 by ilan-gold
Add cluster markers and heatmap to scRNASEQ enhancement New feature or request
#30 opened May 14, 2020 by ilan-gold
1 of 3 tasks
@ilan-gold
1
CODEX offsets.json help wanted Extra attention is needed question Further information is requested
#28 opened May 14, 2020 by ilan-gold
1
h5ad-to-arrow not building
#18 opened Mar 26, 2020 by ilan-gold
1
ATAC-seq output is available... what do we do with it?
#16 opened Mar 25, 2020 by mccalluc
check dtypes in h5ad
#15 opened Feb 27, 2020 by mccalluc
2
Handle cytokit csv
#14 opened Feb 25, 2020 by mccalluc
2
Is ".h5ad" precise enough?
#13 opened Feb 25, 2020 by mccalluc
2
CODEX Data
#12 opened Feb 20, 2020 by ilan-gold
Add "vitessce" to output filenames
#11 opened Feb 18, 2020 by mccalluc
Script to push to dockerhub (or Dockstore?)
#5 opened Dec 13, 2019 by mccalluc
Add lint checks
#4 opened Dec 13, 2019 by mccalluc
ProTip! Adding no:label will show everything without a label.