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ATAC-seq output is available... what do we do with it? #16

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mccalluc opened this issue Mar 25, 2020 · 0 comments

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mccalluc commented Mar 25, 2020

Full pipeline output: https://giygas.compbio.cs.cmu.edu/sc-atac-seq-pipeline-output.tar

Took a few hours longer than I expected, since running the alignment with multiple threads/processes is not yet implemented

And I should have reduced the data set further before testing, but once it was running I didn't want to interrupt it, and didn't realize how long it would take to complete

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