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confirm that image pyramid pipeline does not crop images incorrectly #56

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ngehlenborg opened this issue Aug 1, 2020 · 1 comment
Open

confirm that image pyramid pipeline does not crop images incorrectly #56

ngehlenborg opened this issue Aug 1, 2020 · 1 comment

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@ngehlenborg
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Somewhere along the way from the CZI file to the OME-TIFF image pyramid that we are displaying in Vitessce, part of the image along the left and along the bottom disappeared.

OME-TIFF file with image pyramid (https://portal.hubmapconsortium.org/browse/dataset/2d98d013d475d5bf082212315cac358a derived from https://portal.hubmapconsortium.org/browse/dataset/e6e9bb7c01d3cb9cdb31a8da857f8832):
image

original CZI file (via Elizabeth Neumann):
image
@ngehlenborg
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Confirmed via QuPath that rendering in Vitessce is not the issue:
image

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