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922 Open 1,170 Closed
922 Open 1,170 Closed
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Issues list

barcode correction
#2604 opened Feb 28, 2025 by ruffyp
STAR Aligner Stuck at Mapping Step for Some Samples
#2603 opened Feb 27, 2025 by shadizaheri
Potential mapping issues in Cas9 knockout cells with STAR (the truncated RNA)
#2602 opened Feb 25, 2025 by Kong6868
STAR v2.7.10b - SIGSEGV in PackedArray
#2601 opened Feb 24, 2025 by vdechand
STARsolo 2.7.10b number of unique mapped reads different than Cell Ranger 9.0.0
#2600 opened Feb 20, 2025 by donnyhoang
STAR trimming
#2599 opened Feb 20, 2025 by ulyssebaruchel
Index reads and STARsolo
#2598 opened Feb 20, 2025 by ulyssebaruchel
STARSolo on multiplexed samples
#2597 opened Feb 18, 2025 by bapoorva
read length
#2596 opened Feb 17, 2025 by SREERAMIISERB
STAR FATAL ERROR in reads input
#2595 opened Feb 17, 2025 by zhangjy859
Some reads were mapped to position 0 or beyond the ends of chromosomes when chimeric mapping is enabled.
#2594 opened Feb 17, 2025 by ifantasy
STARsolo segmentation fault
#2593 opened Feb 14, 2025 by brgew
3
Threshold for adapter content for formal trimming being necessary
#2592 opened Feb 14, 2025 by sknaack
Bug: white space in the 'QNAME' field in bam-input-file causes invalid but completed alignment
#2591 opened Feb 13, 2025 by lutrarutra
Error: Segmentation fault (core dumped)
#2590 opened Feb 11, 2025 by pariaaliour
How to create both Gene count and Trascriptome count for RSEM from Bam file?
#2589 opened Feb 10, 2025 by lida-R
@HD tag is missing in Aligned.toTranscriptome.out.bam even with outSAMheaderHD in run command
#2588 opened Feb 10, 2025 by Stikus
25% of reads too short Unmapped in SmartSeq2
#2261 opened Dec 28, 2024 by Rohit-Satyam
1
sambamba flagstat issues in STARsolo
#2260 opened Dec 24, 2024 by onmyojiyys
Splicing Analysis based on STAR quantifications
#2259 opened Dec 19, 2024 by andrebolerbarros
1
v2.7.11b: Segmentation fault in ReadAlign::writeSAM (ReadAlign_outputAlignments.cpp:174)
#2258 opened Dec 18, 2024 by rowanworth
Alignment to mm10 reference genome, the alignment speed extremely slow for one single thread particularly.
#2256 opened Dec 16, 2024 by gongyuTang123
ReadAlignChunk_processChunks.cpp:202:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or >
#2255 opened Dec 16, 2024 by 2061574124
Inquiry about Chimeric Junction Identification in scRNA-seq Data Analysis
#2254 opened Dec 13, 2024 by luojinqin
Missing reads in Transcriptome BAM file when using --quantMode TranscriptomeSAM
#2253 opened Dec 12, 2024 by suzietallon
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