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phytreeviz
Young edited this page Feb 23, 2024
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phyTreeViz
About: |
phyTreeViz is a simple and minimal phylogenetic tree visualization python package implemented based on matplotlib.
This tool does with its current implementation does not create the most appealing images, but they can assist in understanding the relationship of input samples. We strongly encourage the use of additional tools, such as microreact, itol, or ggtree, or a custom script for phytreeviz.
Documentation : https://github.com/moshi4/phyTreeViz
Citation :
Directory tree:
phytreeviz/
├── iqtree_tree.png
└── mashtree_tree.png
Example files:
iqtree_tree.png
mashtree_tree.png
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- amrfinderplus
- bbduk
- blastn
- blobtools_*
- core_genome_evaluation
- circulocov
- datasets_*
- drprg
- elgato
- emmtyper
- fastani
- fastp
- fastqc
- heatcluster
- iqtree2
- kaptive
- kleborate
- kraken2
- mash_*
- mashtree
- mlst
- multiqc
- mykrobe
- panaroo
- pbptyper
- phytreeviz
- plasmidfinder
- prokka
- quast
- seqsero2
- serotypefinder
- shigatyper
- snp_dists
- spades