multiqc
MultiQC
About: |
Aggregate results from bioinformatics analyses across many samples into a single report
Documentation : https://multiqc.info/
Citation : http://dx.doi.org/10.1093/bioinformatics/btw354
Directory tree (adjusts based on input data):
multiqc/
├── multiqc_data
│ ├── multiqc_amrfinderplus-plot.txt
│ ├── multiqc_citations.txt
│ ├── multiqc_data.json
│ ├── multiqc_drprg-plot.txt
│ ├── multiqc_elgato-plot.txt
│ ├── multiqc_emmtyper-plot.txt
│ ├── multiqc_fastani-plot.txt
│ ├── multiqc_general_stats.txt
│ ├── multiqc_kaptive-plot.txt
│ ├── multiqc_kleborate-plot.txt
│ ├── multiqc.log
│ ├── multiqc_mash-plot.txt
│ ├── multiqc_mlst-plot.txt
│ ├── multiqc_mykrobe-plot.txt
│ ├── multiqc_pbptyper-plot.txt
│ ├── multiqc_plasmidfinder-plot.txt
│ ├── multiqc_quast.txt
│ ├── multiqc_seqsero2-plot.txt
│ ├── multiqc_serotypefinder-plot.txt
│ ├── multiqc_shigatyper_hits-plot.txt
│ ├── multiqc_shigatyper-plot.txt
│ └── multiqc_sources.txt
└── multiqc_report.html
Example plots from a multiqc_report.html file:
Software versions:
Quast results:
Mash results:
