Separate use of initial increment/perturbation file from REPLAY/+03 ICs #3119
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Fix a bug in a variable check in the extractvars task where parenthesis in the variable name will prompt a false warning message.
Ice variables are extracted from the history files instead of the product files. This is necessary because there are certain ice variables that are needed that are only available in the history files and not the product files.
Add suggested patches to gefs_replay_ci
Shellcheck disable has been added. Also, f000 is skipped in extractvars for ocn and ice since there are no products for f000 for ocn and ice. This change will remove warning messages.
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CI Passed on Hera in Build# 2 |
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CI Passed on Hercules in Build# 1 |
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CI Tests set up to run in /lfs/h2/emc/ptmp/emc.global/PR/PR_3119/RUNTESTS on WCOSS |
emcbot
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CI Tests set up to run in /lfs/h2/emc/ptmp/emc.global/PR/PR_3119/RUNTESTS on WCOSS |
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CI tests on WCOSS2 are complete and successful: Setting label to passed for WCOSS2. |
KateFriedman-NOAA
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WalterKolczynski-NOAA
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Jan 8, 2025
WalterKolczynski-NOAA
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tsga
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Jan 22, 2025
* develop: Add echgres as a dependency only for RUN=enkfgdas, not enkfgfs (NOAA-EMC#3246) Add domain level to wave gridded COM path (NOAA-EMC#3137) CI JJOB Tests using CMake (NOAA-EMC#3214) Make assorted updates to waves (NOAA-EMC#3190) Move WCOSS2 LD_LIBRARY_PATH patches to load_ufsda_modules.sh (NOAA-EMC#3236) Adding a gefs_arch task to GEFS workflow (NOAA-EMC#3211) Add additional GEFS variables needed for AI/ML applications (NOAA-EMC#3221) Add bmat task dependency to marine LETKF task (NOAA-EMC#3224) Resolve bug with LMOD_TMOD_FIND_FIRST setting affecting build on WCOSS2 (NOAA-EMC#3229) Reinstate product groups (NOAA-EMC#3208) Additional fixes for downstream jobs (NOAA-EMC#3187) Turn IAU off during staging job for cold start experiments (NOAA-EMC#3215) Update the gdas.cd hash and enable GDASApp to run on WCOSS2 (NOAA-EMC#3220) Update upload-artifact to v4 (NOAA-EMC#3216) Prevent duplicate case generation in generate_workflows.sh (NOAA-EMC#3217) Update g-w to cycle with C1152 ATM (NOAA-EMC#3206) Separate use of initial increment/perturbation file from REPLAY/+03 ICs (NOAA-EMC#3119) Update gsi_enkf hash and gsi_ver (NOAA-EMC#3207) Remove cpus-per-task from APRUN_OCNANALECEN on WCOSS2 (NOAA-EMC#3212) Remove 5WAVH from AWIPS GRIB2 parm files (NOAA-EMC#3146) Remove multi-grid wave support (NOAA-EMC#3188) Add echgres as a dependency for earc (NOAA-EMC#3202)
danholdaway
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Jan 27, 2025
* develop: Remove WAFS files and references from `develop` (NOAA-EMC#3263) fix intel stack version number on c5 (NOAA-EMC#3258) Update gsi_monitor and ufs_utils hashes to recent hashes for C5/C6 build and run (NOAA-EMC#3252) Enable DA cycling on gaea C5/C6 (NOAA-EMC#3255) Copy post-processed sea ice increment for diagnostics (NOAA-EMC#3235) Only run METplus in the 3Dvar tests (NOAA-EMC#3245) Clone, build, and run C48_ATM and C48_S2SW on Gaea C5 and C6 (NOAA-EMC#3106) Add echgres as a dependency only for RUN=enkfgdas, not enkfgfs (NOAA-EMC#3246) Add domain level to wave gridded COM path (NOAA-EMC#3137) CI JJOB Tests using CMake (NOAA-EMC#3214) Make assorted updates to waves (NOAA-EMC#3190) Move WCOSS2 LD_LIBRARY_PATH patches to load_ufsda_modules.sh (NOAA-EMC#3236) Adding a gefs_arch task to GEFS workflow (NOAA-EMC#3211) Add additional GEFS variables needed for AI/ML applications (NOAA-EMC#3221) Add bmat task dependency to marine LETKF task (NOAA-EMC#3224) Resolve bug with LMOD_TMOD_FIND_FIRST setting affecting build on WCOSS2 (NOAA-EMC#3229) Reinstate product groups (NOAA-EMC#3208) Additional fixes for downstream jobs (NOAA-EMC#3187) Turn IAU off during staging job for cold start experiments (NOAA-EMC#3215) Update the gdas.cd hash and enable GDASApp to run on WCOSS2 (NOAA-EMC#3220) Update upload-artifact to v4 (NOAA-EMC#3216) Prevent duplicate case generation in generate_workflows.sh (NOAA-EMC#3217) Update g-w to cycle with C1152 ATM (NOAA-EMC#3206) Separate use of initial increment/perturbation file from REPLAY/+03 ICs (NOAA-EMC#3119) Update gsi_enkf hash and gsi_ver (NOAA-EMC#3207) Remove cpus-per-task from APRUN_OCNANALECEN on WCOSS2 (NOAA-EMC#3212) Remove 5WAVH from AWIPS GRIB2 parm files (NOAA-EMC#3146) Remove multi-grid wave support (NOAA-EMC#3188) Add echgres as a dependency for earc (NOAA-EMC#3202) Ensure OCNRES and ICERES have 3 digits in the archive script (NOAA-EMC#3199) Set runtime shell requirements within Jenkins Pipeline (NOAA-EMC#3171) Add efcs and epos to ufs_hybatm xml (NOAA-EMC#3192) (NOAA-EMC#3193) Fix GEFS and SFS compile flags in build_all.sh (NOAA-EMC#3197) Remove early-cycle EnKF forecast (NOAA-EMC#3185) Fix mod_icec bug in atmos_prod (NOAA-EMC#3167) Create compute build option (NOAA-EMC#3186) Support global-workflow using Rocky 8 on CSPs (NOAA-EMC#2998) Change orog gravity wave drag scheme for grid sizes less than 10km (NOAA-EMC#3175) Switch snow DA to use 2DVar for deterministic and ensemble mean (NOAA-EMC#3163) Update compression options for GEFS history files (NOAA-EMC#3184) Update compression options for high res history files (NOAA-EMC#3178) Turn DO_TEST_MODE off (NOAA-EMC#3177) Hotfix for gdas_arch div/0 (NOAA-EMC#3169) Allow building of the ufs-weather-model, WW3 pre/post execs for GFS, GEFS, SFS in the same clone of global-workflow (NOAA-EMC#3098) Switch Aerosol DA to use JCB and Jedi class (NOAA-EMC#3125) Update ufs-weather-model to 2024-12-06 commit (NOAA-EMC#3145) Enable traditional threading as an option (NOAA-EMC#3149) Update HPC_ACCOUNT on Hercules to fv3-cpu (NOAA-EMC#3164) Turn C96C48_ufs_hybatmDA and C48mx500_3DVarAOWCDA into a regression test (NOAA-EMC#3120) Update GSI analysis jobs to use COMIN/COMOUT (NOAA-EMC#3092) Update HPC Tier Definitions (NOAA-EMC#3138) Add marine hybrid envar (NOAA-EMC#3041) Archive the experiment directory along with git status/diff output (NOAA-EMC#3105) Use stochastic restart patterns on rerun (NOAA-EMC#3077) Point Jenkinsfile back to CI/ (NOAA-EMC#3139) Fix wave restart for cold start and add ic version file (NOAA-EMC#3112) Allow users to override the default account at setup time (NOAA-EMC#3127) Refactor gridded wave post (NOAA-EMC#3014) Update docs related to NOAA CSPs (NOAA-EMC#3043) Allow APP to differ between RUNs (NOAA-EMC#2943) Run one executable for soca2cice (instead of two) (NOAA-EMC#3118) Speed up GSI analysis jobs in CI testing (NOAA-EMC#3115) Make aerosol output frequency variable (NOAA-EMC#2982) Add new stations to GFS BUFR sounding products (NOAA-EMC#3107) JCB-based obs+bias staging, Jedi class updates, and marine B-matrix refactoring (NOAA-EMC#2992) Enable tapering of atm ens perts at the model top (NOAA-EMC#3097) Update JGDAS ENKF POST job (NOAA-EMC#3090) SFS Runs at C96mx100 (NOAA-EMC#2960) Move machine-based options from config.base to host files (NOAA-EMC#3053) Remove RUNDIRS before running CI cases to cover re-run events (NOAA-EMC#3076) CI GitHub pipeline (hotfix) update for fetching repo name (NOAA-EMC#3084) Update JGDAS ENKF ECEN job (NOAA-EMC#3050) Update snow obs processing job (NOAA-EMC#3055) Update to action workflow pipeline in default repo for development (NOAA-EMC#3062) Update to action workflow pipeline in default repo for development (NOAA-EMC#3061) Update workflow pipeline (NOAA-EMC#3060) PW CI pipeline update5 ready for review so it can be merged and tested (NOAA-EMC#3059) Revert "GitHub CI Pipeline update for debugging forked PR support" (NOAA-EMC#3057) GitHub CI Pipeline update for debugging forked PR support (NOAA-EMC#3056) Add more ocean variables for post-processing in GEFS (NOAA-EMC#2995) Auto provisioning of PW clusters from GitHub CI added (NOAA-EMC#3051) Fix the name of the TC tracker filenames in archive.py (NOAA-EMC#3030) Make wxflow links static instead of from link_workflow (NOAA-EMC#3008) Update global jdas enkf diag job with COMIN/COMOUT for COM prefix (NOAA-EMC#2959) Add run and finalize methods to marine LETKF task (NOAA-EMC#2944) Fix wave restarts and GEFS FHOUT/FHMAX (NOAA-EMC#3009) Disabling hyper-threading (NOAA-EMC#2965) GitHub Actions Pipeline Updates for Self-Hosted Runners on PW (NOAA-EMC#3018) CI jekninsfile update hotfix (NOAA-EMC#3038) Update gdas.cd (NOAA-EMC#2978) Add ability to add tag to pslots with generate_workflows (NOAA-EMC#3036) CI update to shell environment with HOMEgfs to HOME_GFS for systems that need the path (NOAA-EMC#3013) Quick updated to Jenkins (health check) launch script (NOAA-EMC#3033) Document the generate_workflows.sh script (NOAA-EMC#3028) Replace gfs_cyc with an interval (NOAA-EMC#2928) Hotfix: Fix generate_workflows.sh optional build flags (NOAA-EMC#3024) Add a tool to run multiple YAML cases locally (NOAA-EMC#3004) Hotfix: Correctly set overwrite option when specified (NOAA-EMC#3021)
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Description
This PR is a continuation of the previous SFS PR. The use of initial perturbations/increments for ensemble long forecasts (e.g., SFS and GEFS) was missing from the previous PR because this option was included with the REPLAY_IC option.
In this PR, the REPLAY_IC option is now strictly for the +03 ICs, and the variables USE_ATM_ENS_PERTURB_FILES and USE_OCN_ENS_PERTURB_FILES are used for initialization with the initial perturbation/increment files used for SFS and GEFS reforecasting. This separation will also make it easier to remove the +03 IC optoin.
Type of change
Change characteristics
How has this been tested?
I tested long forecast runs on hercules and multiple CI tests.
Checklist