Package for fetching metadata and downloading data from SRA/ENA/GEO

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

Extract metadata from biosamples in NCBI

ARA.v1.6.0

A tool to prepare files and run/monitor programmatic submissions to NCBI

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

fast utils for fetch and dump NCBI SRA archive raw data

Pulls Metadata from NCBI based on Sample name or SRR #

tair id to pubmed links for articls, genes, annotations, locus tag

Data and code used in the Plant Genomes dashboard

frequency of high level ranks in sequence databases

explore sra databases and sequence retrieval

The Docker integration for the r2g project.

A command-line tool for retrieving annotations from the NCBI SRA.