A demo workflow showing download, extraction, and compression of sequences from SRA.
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Jul 31, 2021 - HTML
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sra-toolkit
Here are 5 public repositories matching this topic...
fast utils for fetch and dump NCBI SRA archive raw data
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May 25, 2023 - Python
High Throughput Sequencing at your fingertips
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Jun 28, 2024 - HTML
This repository contains the code pipeline I developed for Next Generation Sequencing (NGS) analysis during my internship at CSIR-IGIB, New Delhi. The project was completed under the guidance of Mr. Sunil Nagpal and Dr. Bhupesh Taneja. For detailed instructions and a better understanding of pipeline, please refer to the README.md file.
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Oct 7, 2024 - Shell
Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
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Jan 17, 2022 - Nextflow
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