Public Database Submission Pipeline
Beta Version: 1.2.5. This pipeline is currently in Beta testing, and issues could appear during submission. Please use it at your own risk. Feedback and suggestions are welcome!
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seqsender is a Python program that is developed to automate the
process of generating necessary submission files and batch uploading
them to NCBI archives (such as BioSample, SRA, and
Genbank) and GISAID databases (e.g. EpiFlu,
EpiCoV, EpiPox, EpiArbo). Presently, the pipeline is capable
of uploading Influenza A Virus (FLU), SARS-COV-2 (COV),
Monkeypox (POX), Arbovirus (ARBO), and a wide variety of other
organisms. If you’d like to have seqsender support your virus create a
issue.
| Role | Contact |
|---|---|
| Creator | Dakota Howard, Reina Chau |
| Maintainer | Dakota Howard |
| Back-Up | Reina Chau, Brian Lee |
Dakota Howard and Reina Chau for majority of the code base with input and testing from colleagues.
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