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Feature/update pwiz 3 0 21263 #253
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Just checked - this PR does not contain the changes/cleanup I made in the C++ code reading (header) data using proteowizard (#252). But I can later adapt that PR - let's only have the proteowizard update in this one. |
After having another though I think it makes sense to change the current behaviour of the I would thus suggest to remove the lines: if (length(scans) == 1) {
## Convert data.frame to list to be conform with old code
res <- as.list(res)
} in the |
Yes, I think the header should always be a |
I'll make a PR to this branch, so no need to manually change anything @sneumann . |
- Fix header for pwiz backend to always return a `data.frame`. - Update documentation.
PR #254 (into this branch) adds the above described changes (i.e. |
refactor: header always returns a `data.frame` (PR #253)
Hi @sneumann , with the recent changes I can install, but I get the following WARNINGS (which cause the github action to fail):
don't know if there is something that could be done for these. |
Hi, while the Warnings are a nuisance, I'd like to address the errors on all arches first. On Windows I get |
@sneumann Thanks for letting me know - from the log I can see that some macros are undefined or mapped to the wrong type, but this is not a very helpful. I' currently quite busy, so I can't promise when I will find the time to have a look at this. |
Hi, @uly55e5 offered to have a look, thanks David ! Yours, Steffen |
…o feature/updatePwiz_3_0_21263
…warning in GitHub action, update DESCRIPTION and NEWS
Hi, we got things to work on Windows (thanks @uly55e5 !) on the errors on macOS are a failure to set-up R-devel in the first place. It did work some time ago on macOS, we can hope it still does. SInce mzR on BioC devel is broken anyway, I'll merge now and we pick up the pieces from there. Yours, Steffen |
Update to Proteowizard 3_0_21263
Removed RAMP backend, dropping ability to read mzData
Closes #250,
Revisit #247, #245, #235, #233, and maybe others.