Repositories list

• plinkQC

  Public
  R package for quality control of plink genetic datasets

  R

  •

  Other

  •27•57•9•0•Updated Dec 13, 2024Dec 13, 2024

• transcriptomic-diversity-human-mTECs

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Dec 6, 2024Dec 6, 2024

• codepub

  Public
  Algorithms for sequence construction

  Python

  •

  Other

  •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

• rnaseq-tutorial

  Public
  Python

  •4•4•0•0•Updated Oct 31, 2024Oct 31, 2024

• meyer-lab-cshl.github.io

  Public
  JavaScript

  •

  MIT License

  •2•3•0•0•Updated Oct 24, 2024Oct 24, 2024

• plinkQCAncestryData

  Public
  0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• xspeciestcells

  Public
  Transcriptomic profile of human conventional & innate T cells in the thymus and peripheral blood

  HTML

  •1•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• snakemake-uge

  Public
  Python

  •3•8•0•1•Updated Aug 7, 2024Aug 7, 2024

• copepodTCR

  Public
  COmbinatorial PEptide POoling for TCR specificity

  Python

  •

  Other

  •1•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• BATMAN

  Public
  Bayesian inference of Activation of TCR by Mutant Antigens

  bayesian-inferenceimmunoinformaticsepitope-prediction-methods+ 5tcr-epitopeepitope-immunogenicity-predictionepitope-datasetspeptide-bioinformaticst-cell-response

  Jupyter Notebook

  •

  Other

  •0•2•0•0•Updated Jul 2, 2024Jul 2, 2024

• xspeciestcells-shiny

  Public
  R

  •0•0•0•0•Updated Dec 5, 2023Dec 5, 2023

• copepodTCR_paper

  Public
  Data and scripts for analyses conducted in paper

  Jupyter Notebook

  •0•0•0•0•Updated Nov 19, 2023Nov 19, 2023

• combinatorial_pooling

  Public
  Python

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Nov 16, 2023Nov 16, 2023

• in-silico-thymus

  Public
  Jupyter Notebook

  •

  Other

  •0•0•0•21•Updated Jun 3, 2023Jun 3, 2023

• transcriptomic-diversity-human-mTECs-shiny

  Public
  R

  •0•0•0•0•Updated Feb 13, 2023Feb 13, 2023

• limix_qtl

  Public
  Python

  •

  Apache License 2.0

  •13•0•0•0•Updated Jan 29, 2023Jan 29, 2023

• dpi1

  Public
  Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles

  R

  •

  GNU General Public License v2.0

  •2•0•0•0•Updated May 3, 2021May 3, 2021

• drStable

  Public
  R

  •

  Other

  •0•0•0•0•Updated Jan 27, 2021Jan 27, 2021

• wonder-of-unittests

  Public
  The delights of unittests.

  Python

  •0•0•0•0•Updated Dec 7, 2020Dec 7, 2020

• practical-statistics

  Public
  HTML

  •0•1•0•0•Updated Sep 3, 2020Sep 3, 2020

• utility-functions

  Public
  0•0•0•0•Updated Aug 12, 2020Aug 12, 2020

• Genetic-association-studies

  Public
  R

  •0•6•0•0•Updated May 22, 2020May 22, 2020

• R-data-visualisation-course

  Public
  HTML

  •

  MIT License

  •11•9•0•0•Updated Feb 6, 2020Feb 6, 2020