GenomicRanges-based classes for representing, querying, and manipulating matrices of genomic data (ie a map of pairs of genomic coordinates to a numeric value). Applications include visualization and analysis of Hi-C contact maps, barcode overlap in 10X, microhomology heatmaps, pairwise LD, and epistasis.
-
Install
R-3.5
-
Install
devtools
install.packages('devtools')
- Install
gGnome
and dependent packages
## allows dependencies that throw warnings to install
Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS = TRUE)
devtools::install_github('mskilab/GxG')