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mskilab-org

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  1. JaBbA JaBbA Public

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 56 26

  2. gGnome gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 39 20

  3. fishHook fishHook Public

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 27 9

  4. gGnome.js gGnome.js Public

    JavaScript 26 5

  5. gTrack gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 16 12

  6. dryclean dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    R 13 14

Repositories

Showing 10 of 36 repositories
  • case-report Public

    Genomic case report

    mskilab-org/case-report’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 8 0 Updated Dec 19, 2024
  • skilift Public

    An R interface for loading and modifying PGV datafiles

    mskilab-org/skilift’s past year of commit activity
    R 0 3 2 1 Updated Dec 19, 2024
  • Flow Public

    R-based genomics workflow management

    mskilab-org/Flow’s past year of commit activity
    R 8 6 2 1 Updated Dec 11, 2024
  • nf-casereports Public

    End to end cancer genomics pipeline

    mskilab-org/nf-casereports’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Dec 4, 2024
  • SNVplicity Public
    mskilab-org/SNVplicity’s past year of commit activity
    R 0 1 0 0 Updated Dec 4, 2024
  • gUtils Public

    Utility functions to extend and optimize GenomicRanges functionality.

    mskilab-org/gUtils’s past year of commit activity
    R 9 GPL-2.0 10 6 3 Updated Oct 22, 2024
  • dryclean Public

    Irons out wrinkles in noisy coverage data using robust PCA

    mskilab-org/dryclean’s past year of commit activity
    R 13 14 2 1 Updated Sep 11, 2024
  • gGnome Public

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    mskilab-org/gGnome’s past year of commit activity
    R 39 MIT 20 4 10 Updated Aug 24, 2024
  • gTrack Public

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    mskilab-org/gTrack’s past year of commit activity
    R 16 12 9 1 Updated Aug 15, 2024
  • fragCounter Public

    GC and mappability corrected fragment coverage for paired end whole genome sequencing

    mskilab-org/fragCounter’s past year of commit activity
    R 7 MIT 12 15 4 Updated Aug 2, 2024
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