DESCRIPTION

Package: GxG
Title: GxG: Genomic matrices and pairwise genomic features based on GenomicRanges and data.table
Version: 0.1
Authors@R:
	c(person("Marcin", "Imielinski", email = "mai9037@med.cornell.edu", role = c("aut", "cre"),
  ))
Description:
  GenomicRanges-based classes for representing, querying, and manipulating matrices of genomic data (ie a map of pairs of genomic coordinates to a numeric value).  Applications include visualization and analysis of Hi-C contact maps, barcode overlap in 10X, microhomology heatmaps, pairwise LD, and epistasis. 
Remotes: 
  github::mskilab/gUtils,
  github::mskilab/gTrack,
  github::aidenlab/straw/R
Depends:
    R (>= 3.3.0),
    data.table (>= 1.11),
    gTrack,
    magrittr,
    gUtils,     
    reshape2 (>= 0.8),
    GenomicRanges (>= 1.32),
LinkingTo: Rcpp
Imports:
    Matrix,
    igraph,
    methods,
    R6,
    Rcpp,
    stats,
    rtracklayer(>= 1.38),
    RCurl,
    Rcpp,
    stringr (>= 1.3),
    strawr,
    parallel
Suggests: 
  testthat (>= 2.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.1.9000