Add Snapatac2 wrappers

tools/snapatac2/.shed.yml

@@ -0,0 +1,28 @@
+name: snapatac2
+owner: iuc
+description: "SnapATAC2 – A Python/Rust package for single-cell epigenomics analysis"
+homepage_url: https://kzhang.org/SnapATAC2/
+long_description: |
+  SnapATAC2 is a flexible, versatile, and scalable single-cell omics analysis framework.
+
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2
+type: unrestricted
+categories:
+- Epigenetics
+- Sequence Analysis
+auto_tool_repositories:
+  name_template: "{{ tool_id }}"
+  description_template: "Wrapper for the snapatac2 tool suite: {{ tool_name }}"
+suite:
+  name: "suite_snapatac2"
+  description: "SnapATAC2 – A Python/Rust package for single-cell epigenomics analysis"
+  long_description: |
+    SnapATAC2 is a flexible, versatile, and scalable single-cell omics analysis framework, featuring:
+
+      * Scale to more than 10 million cells.
+      * Blazingly fast preprocessing tools for BAM to fragment files conversion and count matrix generation.
+      * Matrix-free spectral embedding algorithm that is applicable to a wide range of single-cell omics data, including single-cell ATAC-seq, single-cell RNA-seq, single-cell Hi-C, and single-cell methylation.
+      * Efficient and scalable co-embedding algorithm for single-cell multi-omics data integration.
+      * End-to-end analysis pipeline for single-cell ATAC-seq data, including preprocessing, dimension reduction, clustering, data integration, peak calling, differential analysis, motif analysis, regulatory network analysis.
+      * Seamless integration with other single-cell analysis packages such as Scanpy.
+      * Implementation of fully backed AnnData.