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Issues list

Correction: fastp is missing an input type on the form select menu
#6781 opened Feb 18, 2025 by jennaj
2
gtdbtk_classify_wf allows invalid characters in input name paper-cut
#6773 opened Feb 17, 2025 by natefoo
1
Enhancement: Clarify mutually exclusive pipeline options on the SPADes tool form + fix non-submission bug
#6741 opened Feb 10, 2025 by jennaj
PCA plot: adjust the labeling (cropped, overlapping labels)
#6722 opened Feb 5, 2025 by KristinaGomoryova
CheckM2 Data Manager writes to CheckM2 install dir
#6717 opened Feb 3, 2025 by natefoo
9
New tool request: Oatk tool request
#6708 opened Jan 29, 2025 by rshelke142
2
Scatterplot: select the columns based on colnames rather than position in the table
#6692 opened Jan 23, 2025 by KristinaGomoryova
1
3
Volcano plot: select the columns based on colnames instead of position
#6691 opened Jan 23, 2025 by KristinaGomoryova
1
1
Add Genes statistics file to snpeff output
#6688 opened Jan 22, 2025 by paulzierep
redundans - Redundans pipeline assists an assembly of heterozygous genomes. tool request
#6675 opened Jan 14, 2025 by bgruening
New tool request: Alewin-fry tool request
#6669 opened Jan 9, 2025 by SaimMomin12
New tool Request: sincei tool request
#6668 opened Jan 9, 2025 by SaimMomin12
Bug in xml wrapper for busco (causing emtpy output files, without any warnings/errors)
#6664 opened Jan 8, 2025 by lsterck
1
Unbound variable 'input'. in picrust2 pipeline
#6655 opened Jan 5, 2025 by bgruening
1
Train Augustus and Train Snap need more flexibility in handling annotation data enhancement
#6623 opened Dec 12, 2024 by wm75
3
Enhancement: Update Kallisto wrapper adding option to save stdout as a dataset for MultiQC use
#6610 opened Dec 4, 2024 by jennaj
1
omamer datamanager broken
#6585 opened Nov 24, 2024 by bernt-matthias
7
Update to codeML?
#6582 opened Nov 21, 2024 by jaredbernard
New tool Addition: Panaroo tool request
#6581 opened Nov 21, 2024 by SaimMomin12
8
new tool request: metaMDBG tool request
#6578 opened Nov 20, 2024 by vgaysin1
bcftools_consensus has duplicate mask options
#6546 opened Nov 10, 2024 by pvanheus
Request for clusterprofiler update
#6535 opened Nov 5, 2024 by nilchia
2
samtools_bam_to_cram does not store genome deltas
#6523 opened Nov 5, 2024 by alpapan
15
Updating RepeatMasker to 4.1.7.1
#6502 opened Oct 31, 2024 by SaimMomin12
Toolshed category typo
#6501 opened Oct 31, 2024 by nomadscientist
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