Merge pull request #5 from greenify/master

MSA visualisation plugin based on BioJS.
galaxyproject · Oct 29, 2014 · f0256c4 · f0256c4
2 parents 66ebbf2 + 9481e43
commit f0256c4
Show file tree

Hide file tree

Showing 3 changed files with 98 additions and 0 deletions.
diff --git a/visualizations/biojs-msa/config/biojs-msa.xml b/visualizations/biojs-msa/config/biojs-msa.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
+<visualization name="BioJS-MSA">
+    <data_sources>
+        <data_source>
+            <model_class>HistoryDatasetAssociation</model_class>
+            <test type="isinstance" test_attr="datatype" result_type="datatype">sequence.Fasta</test>
+            <to_param param_attr="id">dataset_id</to_param>
+        </data_source>
+         <data_source>
+            <model_class>HistoryDatasetAssociation</model_class>
+            <test type="isinstance" test_attr="datatype" result_type="datatype">sequences</test>
+            <to_param param_attr="id">dataset_id</to_param>
+        </data_source>
+    </data_sources>
+    <params>
+        <param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
+    </params>
+    <template>biojs-msa.mako</template>
+</visualization>