Miniprot Update version v0.10 to v0.12 (#5317)

* Update version * Add test for the new param * Update tools/miniprot/miniprot.xml Co-authored-by: Anthony Bretaudeau <[email protected]> * Missing value * Modification param * Modification test for new param * Test * Add new test * Tests * New test * Comment added for trans parameter * Modification input section - trans param * modifications * Modications tests * Add new version 0.12 and news options * style fixes --------- Co-authored-by: Anthony Bretaudeau <[email protected]> Co-authored-by: Björn Grüning <[email protected]>
galaxyproject · Jul 13, 2023 · 7686c03 · 7686c03
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diff --git a/tools/miniprot/macros.xml b/tools/miniprot/macros.xml
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.10</token>
+    <token name="@TOOL_VERSION@">0.12</token>
     <xml name="citation">
         <citations>
             <citation type="doi">10.1093/bioinformatics/btad014</citation> 

diff --git a/tools/miniprot/miniprot.xml b/tools/miniprot/miniprot.xml
diff --git a/tools/miniprot/test-data/output_no_cs.gff b/tools/miniprot/test-data/output_no_cs.gff
diff --git a/tools/miniprot/test-data/output_no_cs.gtf b/tools/miniprot/test-data/output_no_cs.gtf
diff --git a/tools/miniprot/test-data/output_no_cs.paf b/tools/miniprot/test-data/output_no_cs.paf
diff --git a/tools/miniprot/test-data/output_trans.gff b/tools/miniprot/test-data/output_trans.gff
diff --git a/tools/miniprot/test-data/output_trans.gtf b/tools/miniprot/test-data/output_trans.gtf
diff --git a/tools/miniprot/test-data/output_trans.paf b/tools/miniprot/test-data/output_trans.paf