Skip to content

Issues: dauparas/ProteinMPNN

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

51 Open 45 Closed
51 Open 45 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

torch.load with weights_only=False
#121 opened Dec 11, 2024 by zymxiaozhu
Training data for single chain model
#120 opened Nov 27, 2024 by LivC93
bias_by_res_dict format for multi-chain design
#117 opened Nov 10, 2024 by johnnytam100
Generated many same sequences but with differnet scores
#116 opened Oct 30, 2024 by hqdream
1
What's the meaning of "/" in the output .fasta file in ProteinMPNN?
#115 opened Oct 21, 2024 by LinnjiaWen
3
parse cif to train structured data error
#114 opened Sep 18, 2024 by FlorientHuang
2
What dose 'S' key mean in score_only result
#113 opened Sep 5, 2024 by yipukangda
No chain_set_test.jsonl file in the root directory
#111 opened Jul 19, 2024 by Eager-to-earn-money-standing-up
1
How to confirm the global polar amino acid bias value? What is the meaning of 1.39?
#110 opened Jul 15, 2024 by luojc712
2
--omit_AA "CM" parameter?
#109 opened Jul 15, 2024 by Jahyunhong
jsonl file to pdb
#108 opened Jul 13, 2024 by ahorvath
No use of GPU?
#107 opened Jun 1, 2024 by khayatlab
1
Global_score
#106 opened May 7, 2024 by zjlclimb
what pdbx package does parse_cif_noX.py expect?
#105 opened May 2, 2024 by cseed
2
Sampling temperature for flexible chains
#104 opened Apr 24, 2024 by Davood-Norouzi
.Fa Output reorganization question
#103 opened Apr 24, 2024 by noah-c-noah-do
Questions about model weights
#100 opened Apr 17, 2024 by mh8859
RuntimeError: Class values must be smaller than num_classes. | protein_mpnn_utils.py & mask_size issue?
#99 opened Apr 4, 2024 by emilyrkang
What is the difference between --conditional_probs_only_backbone and --unconditional_probs_only
#97 opened Mar 25, 2024 by tsjain
1
Training time
#96 opened Mar 14, 2024 by sahamitul
1
Creates hydrophobic surface patches wit many Ala side chains
#95 opened Feb 29, 2024 by gha2012
2
Model is adding an amino acid to the original sequence
#92 opened Feb 26, 2024 by tony-res
5
Need of assistance and advising
#91 opened Feb 21, 2024 by Hanoriega
How do I use a PSSM with proteinMPNN?
#90 opened Feb 15, 2024 by proteins247
Amino acid sequence has too many "K/E"
#89 opened Feb 13, 2024 by kjogr12
2
ProTip! Follow long discussions with comments:>50.