Skip to content

pangolin-assignment v1.30
Compare
Choose a tag to compare
@AngieHinrichs AngieHinrichs released this 23 Sep 16:38
· 2 commits to main since this release
v1.30
5992d46
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Assignment cache from pango-designation v1.30 on GISAID sequences downloaded through 2024-09-19

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.30 lineageTree.pb> file prior to v1.30 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448
Assets 2
Loading