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@cov-lineages

CoV-lineages

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  1. pango-designation pango-designation Public

    Repository for suggesting new lineages that should be added to the current scheme

    Jupyter Notebook 1k 98

  2. pangolin pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 430 106

  3. pangoLEARN pangoLEARN Public

    Store of the trained model for pangolin to access.

    PureBasic 55 13

  4. constellations constellations Public

    Python 44 17

  5. scorpio scorpio Public

    serious constellations of reoccurring phylogenetically-independent origin

    Python 39 4

  6. lineages lineages Public archive

    Resources for calling and describing the circulating lineages of SARS-CoV-2

    Python 37 10

Repositories

Showing 10 of 18 repositories
  • pango-designation Public

    Repository for suggesting new lineages that should be added to the current scheme

    cov-lineages/pango-designation’s past year of commit activity
    Jupyter Notebook 1,045 98 61 0 Updated Dec 21, 2024
  • pangolin-assignment Public

    The latest lineage assignments from pangolin.

    cov-lineages/pangolin-assignment’s past year of commit activity
    Python 8 GPL-3.0 2 1 0 Updated Nov 21, 2024
  • pangolin-data Public

    Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments

    cov-lineages/pangolin-data’s past year of commit activity
    PureBasic 30 GPL-3.0 2 5 0 Updated Nov 21, 2024
  • hedgehog Public

    Spikey SARS-CoV-2 sequence based lineage set assignment

    cov-lineages/hedgehog’s past year of commit activity
    Python 4 GPL-3.0 3 0 1 Updated Oct 21, 2024
  • lineages-website Public
    cov-lineages/lineages-website’s past year of commit activity
    HTML 16 13 3 1 Updated Oct 16, 2024
  • pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    cov-lineages/pangolin’s past year of commit activity
    Python 430 GPL-3.0 106 15 4 Updated Sep 23, 2024
  • grinch Public

    global report investigating novel coronavirus haplotypes

    cov-lineages/grinch’s past year of commit activity
    Python 6 GPL-3.0 2 3 2 Updated Sep 2, 2024
  • constellations Public
    cov-lineages/constellations’s past year of commit activity
    Python 44 17 3 1 Updated Nov 27, 2023
  • scorpio Public

    serious constellations of reoccurring phylogenetically-independent origin

    cov-lineages/scorpio’s past year of commit activity
    Python 39 GPL-3.0 4 6 0 Updated Oct 11, 2023
  • Sample_names Public
    cov-lineages/Sample_names’s past year of commit activity
    0 0 0 0 Updated Oct 15, 2022
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