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Releases: cov-lineages/pangolin-assignment

pangolin-assignment v1.31

21 Nov 23:06
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Assignment cache from pango-designation v1.31 on GISAID sequences downloaded through 2024-11-19

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.31 lineageTree.pb> file prior to v1.31 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.30

23 Sep 16:38
5992d46
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Assignment cache from pango-designation v1.30 on GISAID sequences downloaded through 2024-09-19

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.30 lineageTree.pb> file prior to v1.30 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.29

30 Jul 17:27
ac78088
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Assignment cache from pango-designation v1.29 on GISAID sequences downloaded through 2024-07-26

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.29 lineageTree.pb> file prior to v1.29 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.28.1

02 Jul 17:53
004fa97
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Assignment cache from pango-designation v1.28 on GISAID sequences downloaded through 2024-07-01, rebuilt for pangolin-data and pangolin-assignment release v1.28.1 (minor release to fix accidental inclusion of KR.2, see cov-lineages/pangolin-data#60).

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.28.1 lineageTree.pb> file prior to v1.28.1 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.28

24 Jun 15:45
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Assignment cache from pango-designation v1.28 on GISAID sequences downloaded through 2024-06-21

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.28 lineageTree.pb> file prior to v1.28 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.27

30 Apr 17:07
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Assignment cache from pango-designation v1.27 on GISAID sequences downloaded through 2024-04-24

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.27 lineageTree.pb> file prior to v1.27 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.26

12 Mar 17:45
7f94d44
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Assignment cache from pango-designation v1.26 on GISAID sequences downloaded through 2024-03-08

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.26 lineageTree.pb> file prior to v1.26 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.25.1

14 Feb 21:04
41584e5
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Assignment cache from pango-designation v1.25 on GISAID sequences downloaded through 2024-02-09, rebuilt for pangolin-data and pangolin-assignment release v1.25.1. [No change to assignments, just re-gzipped; bumping version to stay in sync with pangolin-data.]

pangolin-assignment v1.25

14 Feb 04:39
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Assignment cache from pango-designation v1.25 on GISAID sequences downloaded through 2024-02-09

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.25 lineageTree.pb> file prior to v1.25 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.1
minimap2 2.26-r1175
faToVcf: 448

pangolin-assignment v1.24

22 Jan 15:34
5f0eb43
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Assignment cache from pango-designation v1.24 on GISAID sequences downloaded through 2024-01-19

The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.24 lineageTree.pb> file prior to v1.24 release.

pangolin: 4.3.1
usher 0.6.3
gofasta 1.2.0
minimap2 2.24-r1122
faToVcf: 448