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Inchitomol #86

Merged
merged 5 commits into from
Sep 10, 2024
Merged

Inchitomol #86

merged 5 commits into from
Sep 10, 2024

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frederik-sandfort1
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Closes #84.

  • adds inchi2mol
  • adds a new simplestringtomol abstract element for inchi and smiles to mol
  • includes inchi2mol in autotomol
  • test for inchi2mol

@frederik-sandfort1 frederik-sandfort1 self-assigned this Sep 10, 2024
@frederik-sandfort1 frederik-sandfort1 requested review from JochenSiegWork and c-w-feldmann and removed request for JochenSiegWork September 10, 2024 11:51
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@JochenSiegWork JochenSiegWork left a comment

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lgtm

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@c-w-feldmann c-w-feldmann left a comment

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LGTM

@c-w-feldmann c-w-feldmann added the type: enhancement New feature or request label Sep 10, 2024
@frederik-sandfort1 frederik-sandfort1 merged commit 69a4577 into main Sep 10, 2024
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@frederik-sandfort1 frederik-sandfort1 deleted the inchitomol branch September 10, 2024 14:00
JochenSiegWork pushed a commit that referenced this pull request Sep 20, 2024
* fix molsanitize exception error catching

* linting

* isort on other stuff

* add inchitomol element
JochenSiegWork added a commit that referenced this pull request Sep 23, 2024
* mol2morgan_fingerprint: remove deprecated fp function

    - Remove AllChem.GetMorganFingerprintAsBitVect
      from the code because it is deprecated.
    - Add a test to ensure the bit2atom mapping works
      as intended.

* Error handling sanitize bug (#85)

* fix molsanitize exception error catching

* linting

* isort on other stuff

* Inchitomol (#86)

* fix molsanitize exception error catching

* linting

* isort on other stuff

* add inchitomol element

* Add `--check-only` flag to isort (#88)

* docu: update readme, add image, add feature calc notebook (#90)

* docu: update readme, add image, add feature calc notebook

* readme: add feature calculation example

* readme: add published Molpipeline paper link

* notebooks: add header to feature calculation

* add counted fps to test

---------

Co-authored-by: frederik-sandfort1 <[email protected]>
Co-authored-by: Christian W. Feldmann <[email protected]>
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InchiToMol
3 participants