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PopPUNK v2.3.0
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@johnlees johnlees released this 31 Dec 15:54
· 1617 commits to master since this release
v2.3.0
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Learn about vigilant mode.

This is a major (API-breaking) update which moves the assign and visualisation functions into their own programs, to make the program more modular. The minimum version of pp-sketchlib required is 1.6.0.

New features:

  • Lineage assign mode uses matrix code in pp-sketchlib #108
  • New algorithm for clique pruning #110
  • Visualisation and query moved out of main, and into their own programs #112 #115 #129
  • Simpler CLI defaults #125
  • Updated documentation #122
  • Add edge weights to graph #123
  • Add API for use of poppunk_assign with a http server #124 #131
  • Add corrected/uncorrected distances when plotting k-mer fits #136

Bug fixes:

  • More stable generation of documentation #132
  • Fixes continue mode for QC function #134
  • Fixes long length QC fail #137
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