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Uses new algorithm for clique pruning, which has better scaling #110

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merged 20 commits into from
Nov 11, 2020

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@johnlees johnlees commented Oct 8, 2020

This may select more references than the old version, but it scales a lot better.
GPS picks 1607 references from 35905 input which seems ok. I still need to test on some smaller datasets.

Branched from #108 so that should be merged first

@johnlees johnlees marked this pull request as ready for review November 11, 2020 11:22
@johnlees johnlees merged commit c519f58 into master Nov 11, 2020
@johnlees johnlees deleted the clique_speed branch November 11, 2020 11:34
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