DPClust Docker

This repo contains both a Dockerfile and a Galaxy XML file for DPClust that plug into SMC-het.

The dpc.R pipeline script takes 4 parameters and assumes the sex of the donor is male:

• Mutect VCF file
• There can be multiple samples in the VCF file, supply the number of this sample
• Battenberg copy number output file
• Battenberg purity output file