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DPClust Docker

This repo contains both a Dockerfile and a Galaxy XML file for DPClust that plug into SMC-het.

The dpc.R pipeline script takes 4 parameters and assumes the sex of the donor is male:

  • Mutect VCF file
  • There can be multiple samples in the VCF file, supply the number of this sample
  • Battenberg copy number output file
  • Battenberg purity output file