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Deploy ubuntu 22.04 upgrade to prod#681

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amstilp merged 57 commits intodeploy/productionUW-GAC/primed-django:deploy/productionfrom deploy/stageUW-GAC/primed-django:deploy/stageCopy head branch name to clipboardAug 1, 2024

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Commits on Jul 11, 2024

• Hide inactive users in study site table

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• Merge pull request #652 from UW-GAC/bugfix/hide-inactive-users-on-study-site-table

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• Add the crontab file to the activate script

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Commits on Jul 14, 2024

• Bump types-requests from 2.32.0.20240622 to 2.32.0.20240712

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Commits on Jul 22, 2024

• Fix failing test for mysql

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• Merge pull request #664 from UW-GAC/maint/fix-mysql-failing-test

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• Bump github/combine-prs from 5.0.0 to 5.1.0

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• Bump pytest from 8.2.2 to 8.3.1

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• Bump django-debug-toolbar from 4.4.5 to 4.4.6

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• Bump mypy from 1.10.1 to 1.11.0

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• Bump ruff from 0.5.1 to 0.5.4

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• Bump jsonschema from 4.22.0 to 4.23.0

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• Bump django-crispy-forms from 2.2 to 2.3

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• Bump sqlparse from 0.5.0 to 0.5.1

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• Merge dependabot/github_actions/github/combine-prs-5.1.0 into combined-prs-branch

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• Merge dependabot/pip/pytest-8.3.1 into combined-prs-branch

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• Merge dependabot/pip/sqlparse-0.5.1 into combined-prs-branch

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• Merge dependabot/pip/django-crispy-forms-2.3 into combined-prs-branch

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• Merge dependabot/pip/ruff-0.5.4 into combined-prs-branch

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• Merge dependabot/pip/mypy-1.11.0 into combined-prs-branch

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• Merge dependabot/pip/django-debug-toolbar-4.4.6 into combined-prs-branch

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• Merge dependabot/pip/jsonschema-4.23.0 into combined-prs-branch

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• Merge dependabot/pip/types-requests-2.32.0.20240712 into combined-prs-branch

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• Merge branch 'main' into combined-prs-branch

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• Merge pull request #665 from UW-GAC/combined-prs-branch

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• Update certifi version in requirements file

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• Update zipp version in requirements file

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• Remove temporary pinned versions from requirements.in file

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• Manually update .txt files

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• Remove explicit permissions in workflow

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• More manual updates to requirements file

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Commits on Jul 23, 2024

• Merge pull request #666 from UW-GAC/maint/security-updates

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• Merge pull request #653 from UW-GAC/maint/add-crontab-file-to-activate-scripts

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• Update CI for ubuntu-22.04 upgrade

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• Add quotes around 3.10 in CI

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• Compile requirements files

  

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• Merge pull request #670 from UW-GAC/pip-tools/update-requirements-files/669

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Commits on Jul 26, 2024

• Fix badge for consortium members with data access

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• Merge pull request #671 from UW-GAC/bugfix/fix-study-site-members-with-access-badge

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• Only show active users in UserAutocomplete

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• Use only active users for UserLookupForm queryset

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• Show an alert on the User profile page if user is inactive

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• Show an alert if a user's AnVIL account is inactive

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• Change inactive alerts to have a "danger" background

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• Make the account link alert dismissable

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• Merge pull request #674 from UW-GAC/feature/better-behavior-for-inactive-users

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• Try adding a test to capture inventory inputs bug

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Commits on Jul 29, 2024

• Try modifying the test to catch the bug

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• Try ordering workspaces differently in the test

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• Try rewriting test again

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• Add tests to check ordering of results

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• Fix comments in tests

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• Sort workspaces before concatenating study names

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• Rename phenotype inventory to just "inventory"

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Commits on Jul 30, 2024

• Merge pull request #675 from UW-GAC/bugfix/inventory-inputs-for-multiple-studies

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• Merge pull request #669 from UW-GAC/maint/ubuntu-22.04

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• Merge pull request #680 from UW-GAC/main

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