CTAT mutations installation

CTAT-mutations Installation

CTAT-mutations Software

The CTAT-mutations software can be installed via Conda (simplest) or more manually using the conventional approach. Both options are described below.

Installation via Conda

For those that are Conda users, installation can be as simple as running the following:

   conda install ctat-mutations=2.0.0 

Installation from GitHub

CTAT-mutations makes use of the following companion utilities, which should be separately installed if not already available.

1. GATK4
2. PICARD tools
3. STAR Aligner
4. Samtools
5. Bcftools
6. Tabix

Download and install the latest release of CTAT-mutations from the GitHub CTAT-mutations release page

CTAT-mutations Genome Lib Installation