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@TrinityCTAT

TrinityCTAT

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  1. Trinity_CTAT Trinity_CTAT Public

    116 34

  2. ctat-mutations ctat-mutations Public

    Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

    HTML 74 18

  3. CTAT-VirusIntegrationFinder CTAT-VirusIntegrationFinder Public

    Python 15 5

  4. CTAT-LR-fusion CTAT-LR-fusion Public

    fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

    Perl 14

  5. ctat-genome-lib-builder ctat-genome-lib-builder Public

    Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components

    Perl 10 2

  6. CTAT-SPLICING CTAT-SPLICING Public

    detection of cancer splicing aberrations

    Perl 8 3

Repositories

Showing 10 of 24 repositories
  • CTAT-LR-fusion Public

    fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

    TrinityCTAT/CTAT-LR-fusion’s past year of commit activity
    Perl 14 0 5 0 Updated Dec 18, 2024
  • ctat-minimap2 Public Forked from lh3/minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    TrinityCTAT/ctat-minimap2’s past year of commit activity
    C 1 427 0 0 Updated Dec 18, 2024
  • rnaseqc Public Forked from getzlab/rnaseqc

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    TrinityCTAT/rnaseqc’s past year of commit activity
    C++ 0 20 0 0 Updated Nov 26, 2024
  • CTAT-SPLICING Public

    detection of cancer splicing aberrations

    TrinityCTAT/CTAT-SPLICING’s past year of commit activity
    Perl 8 3 6 0 Updated Nov 22, 2024
  • ctat-mutations-benchmarking Public

    benchmarking utilities for ctat-mutations

    TrinityCTAT/ctat-mutations-benchmarking’s past year of commit activity
    Python 1 0 0 0 Updated Oct 29, 2024
  • ctat-mutations Public

    Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

    TrinityCTAT/ctat-mutations’s past year of commit activity
    HTML 74 18 44 0 Updated Jul 20, 2024
  • TrinityCTAT/CTAT_VIF_Paper’s past year of commit activity
    Python 0 0 0 0 Updated Jun 24, 2024
  • TrinityCTAT/CTAT-VirusIntegrationFinder’s past year of commit activity
    Python 15 BSD-3-Clause 5 3 1 Updated Nov 22, 2023
  • ctat-genome-lib-builder Public

    Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components

    TrinityCTAT/ctat-genome-lib-builder’s past year of commit activity
    Perl 10 BSD-3-Clause 2 10 1 Updated Oct 27, 2023
  • Trinity_CTAT Public
    TrinityCTAT/Trinity_CTAT’s past year of commit activity
    116 34 3 1 Updated Sep 5, 2023

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