Skip to content

v2.6.0
Compare
Choose a tag to compare
@edkerk edkerk released this 09 Feb 14:50
· 440 commits to main since this release
v2.6.0
d5dfa5c
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Verified
Learn about vigilant mode.
  • fix:
    • exportModel correct handling if a compartment ID is i (solves #366)
    • functions that use a species FASTA file as input (e.g. getBlast) will copy this FASTA file to a temporary directory to avoid potential issues with the original path when running external software (e.g. BLAST) (PR #368)
    • rename compareModels to compareRxnsGenesMetsComps (PR #388)
    • speed-up convertToIrrev (PR #391)
    • getKEGGModelForOrganism now checks organismID validity (PR #392)
  • feat:
    • pretrained HMM sets updated to KEGG version 100. Only 90% sequence identity sets will be distributed from now on (PR #395)
    • CD-HIT and MAFFT run on Windows via Windows Subsystem for Linux (PR #395)
    • sortIdentifiers sorts metabolites, reactions, genes and compartments alphabetically by their identifier, and can be set as option (sortIds, default = false) when exporting models (PR #364)
    • allow getKEGGModelForOrganism to take a preloaded model from getModelFromKEGG, to speed up generating many models for different species (PR #369)
    • add unit tests for external software (PR #377)
    • checkModelStruct includes check for objective function (PR #379)
    • automated testing via GitHub Actions (PR #384)
  • doc:
    • checkInstallation: remove reference to mosek, and output MATLAB release (PR #373)
    • updateDocumentation removes keggModel.mat (PR #389)
  • chore:
    • rename stabile branch to main (PR #383)
Assets 4
Loading