Plan for v0.6.1

[matinnuhamunada]

Fix issues:

• BGC Feature default input directory  #225
• Error in antismash_overview : invalid literal "<" for int in start position of region field #220
• Integrated GTDB summary table  #216
• Feature: df_bgcs tables with all metadata #197
• Update to antismash 7 #187 Use pip to install from source
• Multiprocessing for automlst wrapper #164
• BiG-SLICE and BiG-SCAPE integration strategy #211
• Shell error in antismash_overview_gather rule: Argument list too long #229 - should be solved here.

Issues for BGC feature:

• BiG-SCAPE and BiG-SLICE use all BGCs in the selected genomes, not just the one selected
• Install interproscan is not stable
• Automatically add gbk path to bgc table

Maybe for 0.7.0:

• enable pipeline as an alias to rules
• Containerize workflow #180
• BiGFAM taxonomy extraction #219
• Automatically generate tables for tools github #209
• Enable using input from gbk files
• Option to choose annotation from Bakta or Prokka
• Alternative to Roary
• Update dependencies

[matinnuhamunada]

Add more fixes:

• "Error in rule fix_gtdb_taxonomy" for custom data #235
• Conda error while installing deepTFactor #234

[matinnuhamunada]

This error is introduced when strain is a number (float or int). Should make a test for it.