You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
We should have a summary table that ensures we have GTDB assignments for all genomes.
Currently, the df_gtdb_meta table does not have information for genomes missing from the database. For example, projects after qc step don't have the info on GTDB for all genomes in the processed table.
It will also be good to just create a new integrated table that will have information from both GTDB and GTDB-tk (from the rule or provided file). This table can have only the columns describing the taxonomic levels instead of all the extra columns provided in df_gtdb_meta.csv file.
The text was updated successfully, but these errors were encountered:
We should have a summary table that ensures we have GTDB assignments for all genomes.
Currently, the df_gtdb_meta table does not have information for genomes missing from the database. For example, projects after qc step don't have the info on GTDB for all genomes in the processed table.
It will also be good to just create a new integrated table that will have information from both GTDB and GTDB-tk (from the rule or provided file). This table can have only the columns describing the taxonomic levels instead of all the extra columns provided in df_gtdb_meta.csv file.
The text was updated successfully, but these errors were encountered: