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APT | Update fails due to missing binary-<arch> entry (binary-all only) #2724

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aspinks opened this issue Apr 19, 2019 · 19 comments
Closed

APT | Update fails due to missing binary-<arch> entry (binary-all only) #2724

aspinks opened this issue Apr 19, 2019 · 19 comments
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Outside of DietPi scripts eg: user installed/configured software Solution available 🥂 Definite solution has been done

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@aspinks
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aspinks commented Apr 19, 2019

i know this is old but i ran this:
wget https://raw.githubusercontent.com/Fourdee/DietPi/0f18aa4dc0af8ab910a0173dce8849d5b53c30b0/dietpi/func/dietpi-globals -O /DietPi/dietpi/func/dietpi-globals
now when i try to install it goes to the drive manager. i exit that and get this:
OK ] DietPi-Software | Installing Sonarr: automatically download TV shows
[ OK ] DietPi-Software | Free space check: path=/ | available=24428 MB | required=500 MB

then it goes to the command prompt.
@MichaIng
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MichaIng commented Apr 19, 2019 •
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@aspinks
Uiii, this fix (Ref: #1923) is totally outdated. This was for v6.11 (fixed/implemented with v6.12), now we are on v6.22 and downloading a v6.11(comma 5) script (especially the globals) for sure breaks everything else (DietPi scripts) 😉.

Please reapply the current master version:

wget https://raw.githubusercontent.com/MichaIng/DietPi/master/dietpi/func/dietpi-globals -O /DietPi/dietpi/func/dietpi-globals
. /DietPi/dietpi/func/dietpi-globals

Then please retry installing Sonarr and paste the output of any error (or the whole dietpi-software output) here, so we can investigate.

@MichaIng MichaIng mentioned this issue Apr 19, 2019
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@aspinks
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aspinks commented Apr 19, 2019 •
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thank you!, so that fixed that part but now i am back to my original problem. I tried to install filebot via command line earlier and now when I go to install sonar i get this error:

Details:

  • Date | Fri 19 Apr 17:35:10 CDT 2019
  • Bug report | N/A
  • DietPi version | v6.22.3 (Fourdee/master)
  • Img creator | n/a
  • Pre-image | n/a
  • SBC device | Native PC (x86_64) (index=21)
  • Kernel version | Fix warning when running scp over openssh-server #1 SMP Debian 4.9.65-3+deb9u2 (2018-01-04)
  • Distro | stretch (index=4)
  • Command | G_AGUP
  • Exit code | 100
  • Software title | DietPi-Software

Steps to reproduce:

  1. ...running any software install
  2. ...

Expected behaviour:

  • ...installing software

Actual behaviour:

  • ...

Extra details:

  • ...this happened once when i tried to install sonarr via dietpi-software. if fixed that by doing a clean install

Additional logs:

Log file contents:
Ign:1 https://get.filebot.net/deb universal-jdk8 InRelease
Get:2 https://get.filebot.net/deb universal-jdk8 Release [1,165 B]
Get:3 https://get.filebot.net/deb universal-jdk8 Release.gpg [587 B]
Get:4 https://get.filebot.net/deb universal-jdk8/main all Packages [547 B]
Ign:5 https://cdn-aws.deb.debian.org/debian stretch InRelease
Hit:6 https://cdn-aws.deb.debian.org/debian stretch-updates InRelease
Hit:7 https://cdn-aws.deb.debian.org/debian-security stretch/updates InRelease
Hit:8 https://cdn-aws.deb.debian.org/debian stretch-backports InRelease
Hit:9 https://cdn-aws.deb.debian.org/debian stretch Release
Fetched 2,299 B in 1s (1,413 B/s)
Reading package lists...
E: Failed to fetch https://get.filebot.net/deb/dists/universal-jdk8/InRelease  Unable to find expected entry 'main/binary-amd64/Packages' in Release file (Wrong sources.list entry or malformed file)
E: Some index files failed to download. They have been ignored, or old ones used instead.

[FAILED] DietPi-Software | Unable to continue, DietPi-Software will now terminate.

@MichaIng
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@aspinks
Ah I see, the filebot APT repo fails like this. Reason is it does not contain an explicit binary-amd64 dir: https://get.filebot.net/deb/dists/universal-jdk8/main/
Not sure why APT throws an error if instead binary-all is present (like here), but it does. I found the info that universal/universal-jdk8 are actually made for Debain Buster and Ubuntu 18: https://www.filebot.net/forums/viewtopic.php?f=11&t=6028
Perhaps the APT version on Debian Buster (and Ubuntu 18) allow binary-all-only, but on Stretch it does not.

Please adjust the sources list entry like this: deb https://get.filebot.net/deb/ stable main
This branch contains the required binary-amd64 dir: https://get.filebot.net/deb/dists/stable/main/

@MichaIng MichaIng added the Outside of DietPi scripts eg: user installed/configured software label Apr 19, 2019
@MichaIng MichaIng changed the title cant install software on dietpi APT | Update fails due to missing binary-<arch> entry (binary-all only) Apr 19, 2019
@aspinks
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aspinks commented Apr 19, 2019 •
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first off thank you for the fast and great responses. I imagine i need github repository to do this. in my own efforts to fix this before i found your help i uninstalled github repository and cannot reinstall it. i get the same errors as listed above. how do i clear those out so i can get the repository and try installing filebot? this is what i get when i try to install github or anything at all:

Log file contents:
Ign:1 https://get.filebot.net/deb universal-jdk8 InRelease
Get:2 https://get.filebot.net/deb universal-jdk8 Release [1,165 B]
Get:3 https://get.filebot.net/deb universal-jdk8 Release.gpg [587 B]
Get:4 https://get.filebot.net/deb universal-jdk8/main all Packages [547 B]
Ign:5 https://cdn-aws.deb.debian.org/debian stretch InRelease
Hit:6 https://cdn-aws.deb.debian.org/debian stretch-updates InRelease
Hit:7 https://cdn-aws.deb.debian.org/debian-security stretch/updates InRelease
Hit:8 https://cdn-aws.deb.debian.org/debian stretch-backports InRelease
Hit:9 https://cdn-aws.deb.debian.org/debian stretch Release
Fetched 2,299 B in 1s (1,413 B/s)
Reading package lists...
E: Failed to fetch https://get.filebot.net/deb/dists/universal-jdk8/InRelease Unable to find expected entry 'main/binary-amd64/Packages' in Release file (Wrong sources.list entry or malformed file)
E: Some index files failed to download. They have been ignored, or old ones used instead.

@MichaIng
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@aspinks
Sorry for the late reply. Actually I already answered from module, but it seems to not have been posted... connection issue on the road...

I imagine i need github repository to do this.
...
this is what i get when i try to install github or anything at all:

What do you mean by "github" in this relation? Did you run some installer script from a GitHub repo?

However, you can leave things as they are, just as said, universal-jdk8 is no valid branch for Debian Stretch. Please do:

sed -i 's/universal-jdk8/stable/' /etc/apt/sources.list.d/*
G_AGUP

@aspinks
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aspinks commented Apr 26, 2019 •
edited by MichaIng
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sorry for the delay, been out of town for work.

when i run sed -i 's/universal-jdk8/stable/' /etc/apt/sources.list.d/*
G_AGUP or any built in installer,

i get this:

─┤ DietPi Error Handler: ├──────────────────────────────
GUP
Exit code: 100
DietPi version: v6.22.3 (Fourdee/master) | HW_MODEL:21 | HW_ARCH:10 | DISTRO:4
Image creator: n/a
Pre-image: n/a

 file contents:
:1 https://get.filebot.net/deb stable InRelease
:2 https://get.filebot.net/deb stable Release [1,175 B]
:3 https://get.filebot.net/deb stable Release.gpg [587 B]
:4 https://cdn-aws.deb.debian.org/debian stretch InRelease
:5 https://cdn-aws.deb.debian.org/debian stretch-updates InRelease [91.0 kB]
:6 https://cdn-aws.deb.debian.org/debian-security stretch/updates InRelease [94.

:7 https://cdn-aws.deb.debian.org/debian stretch-backports InRelease [91.8 kB]

 Retry         : Re-run the last command that failed
            DietPi-Config : Edit network, APT/NTP mirror settings etc

I exit that and it gives me this:

Details:

  • Date | Fri 26 Apr 17:17:06 CDT 2019
  • Bug report | N/A
  • DietPi version | v6.22.3 (Fourdee/master)
  • Img creator | n/a
  • Pre-image | n/a
  • SBC device | Native PC (x86_64) (index=21)
  • Kernel version | Fix warning when running scp over openssh-server #1 SMP Debian 4.9.65-3+deb9u2 (2018-01-04)
  • Distro | stretch (index=4)
  • Command | G_AGUP
  • Exit code | 100
  • Software title |

Steps to reproduce:

  1. ...trying to install anything at all
  2. ...

Expected behaviour:

  • ... it should install

Actual behaviour:

  • ... i get the error listed below

Extra details:

  • ...

Additional logs:

Log file contents:
Ign:1 https://get.filebot.net/deb stable InRelease
Get:2 https://get.filebot.net/deb stable Release [1,175 B]
Get:3 https://get.filebot.net/deb stable Release.gpg [587 B]
Ign:4 https://cdn-aws.deb.debian.org/debian stretch InRelease
Get:5 https://cdn-aws.deb.debian.org/debian stretch-updates InRelease [91.0 kB]
Get:6 https://cdn-aws.deb.debian.org/debian-security stretch/updates InRelease [94.3 kB]
Get:7 https://cdn-aws.deb.debian.org/debian stretch-backports InRelease [91.8 kB]
Hit:8 https://cdn-aws.deb.debian.org/debian stretch Release
Get:9 https://cdn-aws.deb.debian.org/debian-security stretch/updates/main amd64 Packages [485 kB]
Get:10 https://cdn-aws.deb.debian.org/debian-security stretch/updates/main i386 Packages [486 kB]
Get:12 https://cdn-aws.deb.debian.org/debian stretch-backports/main i386 Packages.diff/Index [27.8 kB]
Get:13 https://cdn-aws.deb.debian.org/debian stretch-backports/main amd64 Packages.diff/Index [27.8 kB]
Get:14 https://cdn-aws.deb.debian.org/debian stretch-backports/main Translation-en.diff/Index [27.8 kB]
Get:15 https://cdn-aws.deb.debian.org/debian stretch-backports/main i386 Packages 2019-04-25-1416.16.pdiff [1,473 B]
Get:16 https://cdn-aws.deb.debian.org/debian stretch-backports/main i386 Packages 2019-04-25-2030.15.pdiff [3,177 B]
Get:16 https://cdn-aws.deb.debian.org/debian stretch-backports/main i386 Packages 2019-04-25-2030.15.pdiff [3,177 B]
Get:17 https://cdn-aws.deb.debian.org/debian stretch-backports/main amd64 Packages 2019-04-25-1416.16.pdiff [3,251 B]
Get:18 https://cdn-aws.deb.debian.org/debian stretch-backports/main amd64 Packages 2019-04-25-2030.15.pdiff [1,893 B]
Get:18 https://cdn-aws.deb.debian.org/debian stretch-backports/main amd64 Packages 2019-04-25-2030.15.pdiff [1,893 B]
Get:19 https://cdn-aws.deb.debian.org/debian stretch-backports/main Translation-en 2019-04-25-1416.16.pdiff [789 B]
Get:19 https://cdn-aws.deb.debian.org/debian stretch-backports/main Translation-en 2019-04-25-1416.16.pdiff [789 B]
Fetched 1,344 kB in 3s (339 kB/s)
Reading package lists...
E: Failed to fetch https://get.filebot.net/deb/dists/stable/InRelease  Unable to find expected entry 'main/binary-i386/Packages' in Release file (Wrong sources.list entry or malformed file)
E: Some index files failed to download. They have been ignored, or old ones used instead.

@MichaIng
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@aspinks

expected entry 'main/binary-i386/Packages'

Strange since your system is x86_64. We do add i386 arch to APT on x86 images but that only "allows" it but not "requires" i386 to be present. The required main/binary-amd64/Packages is there: https://get.filebot.net/deb/dists/stable/Release

However please try to remove the arch:

dpkg --remove-architecture i386
apt update

@aspinks
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aspinks commented Apr 26, 2019

i think that may have worked, fingers crossed...

@MichaIng
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@aspinks
If apt update did not show any error now, it did. I will mark this issue as closed. However feel free to reopen if the issue persists.

@MichaIng MichaIng added Solution available 🥂 Definite solution has been done and removed Investigating 🤔 labels Apr 27, 2019
@aspinks
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aspinks commented Apr 29, 2019

sorry to be a bother but i tried running

deb https://get.filebot.net/deb/ stable main

i get

-bash: deb: command not found

@MichaIng
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@aspinks
deb https://get.filebot.net/deb/ stable main is not a command but the desired content of the related file in the directory /etc/apt/sources.list.d/. But according to your output above (#2724 (comment)) this has already been applied by the sed ... command I posted before.

Does apt update still show some error like this (?):

E: Failed to fetch https://get.filebot.net/deb/dists/stable/InRelease  Unable to find expected entry 'main/binary-i386/Packages' in Release file (Wrong sources.list entry or malformed file)
E: Some index files failed to download. They have been ignored, or old ones used instead.

@aspinks
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aspinks commented Apr 29, 2019

so when i run "apt update" i get no errors but this is what shows everytime.
Capture

@MichaIng
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@aspinks
Jep as expected.

There is one updated package available. You can update it via: G_AGUG

@aspinks
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aspinks commented May 1, 2019

I ran G_AGUG and it upgraded but I am still getting the same read out as above.

@MichaIng
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MichaIng commented May 1, 2019

@aspinks
As said, this is the usual readout telling you about APT lists being updated. Everything is fine.

@aspinks
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aspinks commented May 1, 2019

My apologies, I misunderstood. I am still learning linux. So does this mean filebot is installed? Is it possible to run it on the gui? I am using mate as the desktop. Again thank you for all the help

@MichaIng
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MichaIng commented May 1, 2019

@aspinks
Ah sorry no since the APT list update failed, of course not 🙈.

Do:

apt install filebot

@aspinks
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aspinks commented May 1, 2019

so i ran that and thought i had it but got the following
filebot

@MichaIng
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MichaIng commented May 1, 2019 •
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@aspinks
Ah yeah the still remaining APT issue with Java + ca-certificates-java. Should be resolved with:
apt -f install

Ah wait, actually this issue did only occur on ARM devices 🤔. However this was with Java 8 and you install Java 11. Try the above.

Just checked the related issue: #2524
In case the above still throws an error:

update-ca-certificates
dpkg --configure ca-certificates
dpkg --configure ca-certificates-java
dpkg --configure openjdk-11-jre-headless
dpkg --configure openjdk-11-jre
dpkg --configure filebot

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