v2024-02-05
What's Changed
Ontology content
- Relax logical definition of water ice, liquid water=>water. by @cmungall in #1411
- multiple NTRs for GOLD annotations, closes #1367 by @turbomam in #1391
- Replacing EnvO hash-relations, fixes #1380. by @cmungall in #1381
- Soil compaction by @marieALaporte in #1373
- Astronomical Body Part refactoring by @cmungall in #1430
- Fixed logical def for animal environment. Fixes #1435 by @cmungall in #1439
- Alicia's stream parts with revisions by PLB by @turbomam in #1451
- Remove legacy synonyms on ice sheet by @hrshdhgd in #1447
- add biome 'part of' 'climactic ecological succession' axioms for better inferred hierarchy by @turbomam in #1459
- Addressing #865 with desert biome example by @pbuttigieg in #1445
- Proposal: obsolete 'alga' by @hrshdhgd in #1450
- remove 'algal bloom' 'results in proliferation of' some 'obsolete alga' by @turbomam in #1483
- 'periphytic biofilm' and subClasses: start with 'periphytic biofilm' subClassOf 'biofilm' by @turbomam in #1468
- Periphytic biofilm subclasses by @turbomam in #1472
- #1474 epiphyton dbxrefs by @turbomam in #1475
- added stream water by @turbomam in #1479
- added freshwater stream and biome by @turbomam in #1477
Ontology patterns
- replacing hasAlternativeId with hasDbXref for all non-ENVO literal CURIEs. by @cmungall in #1418
- Modify containment relations to be location relations. by @cmungall in #1425
- Standardize ad-hoc definition of plural synonym by @cthoyt in #1465
Infrastructure
- Create sssom-qc.yml by @matentzn in #1414
- Use SSSOM format for IGSN mappings by @cmungall in #984
- SSSOM QC esp. for sweet by @rduerr in #1412
- normalized serialization of envo-edit for new owlapi by @cmungall in #1436
- renormalizing to latest owlapi by @cmungall in #1452
- Smaller NMDC id range... remainder for Mark and Alicia by @turbomam in #1438
- add obook pull request guide to CONTRIBUTING.md by @cmungall in #1431
- Implement
ontobot-change-agent
as a GitHub action workflow by @hrshdhgd in #1443 - SPARQL for misclassified biomes by @turbomam in #1457
- Switch NCBITAXON and CHEBI to slims by @matentzn in #1455
- Update
ontobot.yml
workflow to usekgcl-java
as a plugin to robot that already exists in ODK. by @hrshdhgd in #1467
New Contributors
Full Changelog: v2023-02-13...v2024-02-05