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multiple NTRs, closes #1367 #1391

Merged
merged 4 commits into from
Aug 26, 2023
Merged

multiple NTRs, closes #1367 #1391

merged 4 commits into from
Aug 26, 2023

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turbomam
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@turbomam turbomam commented Dec 5, 2022

closes #1367

added the following from NMDC-03_EnvO_template_robot_sheet

ontology ID label
ENVO:03600090 alcohol fermentation pit
ENVO:03600092 artificial pond
ENVO:03600093 artificial satellite
ENVO:03600091 clay fermentation pit

@turbomam turbomam requested a review from pbuttigieg December 5, 2022 17:08
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Some minor tweaks


# Class: <http://purl.obolibrary.org/obo/ENVO_03600093> (artificial satellite)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Satellite") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03600093> "A human construction that has intentionally been placed into orbit.")
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The placement may not always be artificial, but should be okay for now.

Comment on lines +44803 to +44810
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03600092> "A pond which has been constructed by humans or their technologies.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ENVO_03600092> "https://orcid.org/0000-0001-9076-6066")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ENVO_03600092> "https://orcid.org/0000-0001-9625-1899")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ENVO_03600092> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ENVO_03600092> "2021-08-09T15:00:00.000Z")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03600092> "Definition from 2021-08-05 call with Buttigieg, Duncan and Miller")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03600092> "artificial pond")
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03600092> <http://purl.obolibrary.org/obo/ENVO_00000033>)
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I don't see the axiom about being the output of a human-led construction process - that would allow it to be reasoned under the respective branch.

Comment on lines +44792 to +44799
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03600091> "A fermentation pit which is constructed from clay.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ENVO_03600091> "https://orcid.org/0000-0001-9076-6066")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ENVO_03600091> "https://orcid.org/0000-0001-9625-1899")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/ENVO_03600091> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/ENVO_03600091> "2021-08-09T15:00:00.000Z")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03600091> "Definition from 2021-08-05 call with Buttigieg, Duncan and Miller")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03600091> "clay fermentation pit")
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03600091> <http://purl.obolibrary.org/obo/ENVO_01001871>)
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An axiom that links this to ENVO:clay would be handy, but not a necessity

@cmungall cmungall changed the title closes #1367 ? multiple NTRs, closes #1367 Aug 26, 2023
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I'll make issues for the remaining non-blocking issues

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closing several old term request issues from Jagadish
3 participants