v2.1.0

20190205

20190123

v2.0.9

20190128

20181226

20181226

20181226

v2.0.7

20181226

20171010

2017-10-09 Xiaowei Zhan [email protected]

    * Support BGEN format (see example/experimental/cmd.sh)
    * Add bgen2vcf, bgenFileInfo utitlies
    * Add timeout when checking new version
    * Improve speed of covariance calculation
    * Update combineKinship.py
    * Support KGGSeq inputs

2017-08-18 Xiaowei Zhan [email protected]

    * Improve speed of covariance calculations
    * Clean codes

2017-07-13 Xiaowei Zhan [email protected]

    * Fix beta estimation in binary score tests for unrelated individuals

20170613

2017-06-13 Xiaowei Zhan [email protected]

    * Fix a bug related Wald test outputs (fix #30)
    * Fix zero af in famscore (fix #34)

2017-06-09 Xiaowei Zhan [email protected]

    * Add "--outputID" to output VCF ID to association results (fix #14, #24)
    * Improve error messages when loading decomposed kinship file (fix #29)
    * Add "RVTESTS successfully exit" to stdout (fix #31)
    * Add FASTLMM_DEBUG environment variable to ease debugging (refer to #32)
    * Fix strtol related warning (possibly) (refer to #33)
    * Clean codes

2017-04-27 Xiaowei Zhan [email protected]

    * Add boltCov model

20170418

2017-04-14 Xiaowei Zhan [email protected]

    * Fix a critical bug related to AF calculation (issue 15)
    * Fix siteFile flag and provide prompt when it's used

2017-04-12 Xiaowei Zhan [email protected]

    * Support comma as a separator in parameter options

2017-03-07 Xiaowei Zhan [email protected]

    * Fix SE calculation in '--single score' (continuous/binary traits)
    * Add --numThreads option (may increase speed)
    * Improve BoltLMM model
    * Add more test cases
    * Fix .dim file outputs from vcf2kinship

20170228

2017-02-28 Xiaowei Zhan [email protected]

    * Fix a bug when loadindg a group of varaints
    * Fix SE calculation in '--single score' for quantitative traits
    * Fix BoltLMM implementation
    * Improve SkatO robustness
    * Revise documentation

20170210

2017-02-10 Xiaowei Zhan [email protected]

    * Fix bugs (issue #13)
    * Improve supports for multi-allelic variants
    * Improve codes (more functions), revise documentation

20170110

2017-01-10 Xiaowei Zhan [email protected]

* Add more test cases
* Add support for loading multiple phenotypes (--multiplePheno)
* Add a score model for multiple phenotypes (--single mtscore)
* Add an approx model for multiple phenotypes (--single fastmtscore)
* Change bolt model options (--meta score[bolt] --boltPlink)
* Fix a bug that crashed SKAT-O
* Clean codes

2016-09-28 Xiaowei Zhan [email protected]

* Add a new fast meta-analysis models (--meta bolt[genotypeFile=XXX])
* Update third libraries

2016-06-30 Xiaowei Zhan [email protected]

* Add support for MKL library (USE_MKL=[dynamic|static])

2016-06-24 Xiaowei Zhan [email protected]

* Fix a bug related to flipping to minor alleles

2016-05-16 Xiaowei Zhan [email protected]

* Optimize code (faster speed, smaller memory consumptions)