Run tests on numpy 1.23 #2124
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Run tests on numpy 1.23 #2124
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jhamman
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Aug 26, 2024
| @@ -18,8 +18,6 @@ jobs: | |||
| python-version: ['3.10', '3.11', '3.12'] | |||
| numpy_version: ['>=1.24.0', '==1.23.*'] | |||
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maybe we should do this now:
Suggested change
| numpy_version: ['>=1.24.0', '==1.23.*'] | |
| numpy_version: ['==1.24*', '==1.26*', '>=2.1] |
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Are there big differences between 1.24 and 1.26 that make it worth testing on both of them?
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I'm betting that there are a number of projects that are stuck on 1.26 while they sort out numpy 2 compatibility. The main thrust of my comment is that 1.24 is our current support minimum (https://scientific-python.org/specs/spec-0000/).
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It's still 1.23 on main:
Line 16 in 2e928b1
jhamman
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* Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#1586) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.10...v1.8.11) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (#1587) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v2.3.0...v3.0.1) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * * Cache result of FSStore._fsspec_installed (#1581) Prevent runtime-overhead in doing this check multiple times * Bump version of black in pre-commit (#1559) * Use list comprehension where applicable (#1555) Even if this is only a test, list comprehensions are faster than repeatedly call append(). Also use tuple instead of list when possible. Co-authored-by: Davis Bennett <[email protected]> * Bump numcodecs from 0.11.0 to 0.12.1 (#1580) Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1. - [Release notes](https://github.com/zarr-developers/numcodecs/releases) - [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst) - [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.11.0...v0.12.1) --- updated-dependencies: - dependency-name: numcodecs dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <[email protected]> * Use format specification mini-language to format string (#1558) Co-authored-by: Joe Hamman <[email protected]> * Single startswith() call instead of multiple ones (#1556) It's faster and probably more readable. Co-authored-by: Davis Bennett <[email protected]> Co-authored-by: Joe Hamman <[email protected]> * Bump pymongo from 4.5.0 to 4.6.1 (#1585) Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1. - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.5.0...4.6.1) --- updated-dependencies: - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <[email protected]> * Move codespell options around (#1196) Starting with codespell 2.2.2, options can be specified in `pyrpoject.toml` in addition to `setup.cfg`: https://github.com/codespell-project/codespell#using-a-config-file Specifying options in a config file instead of command line options in `.pre-commit-config.yaml` ensures codespell uses the same options when run as pre-commit hook or from the command line in the repository root directory. * Bump fsspec from 2023.10.0 to 2023.12.1 (#1600) * Bump fsspec from 2023.10.0 to 2023.12.1 Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1. - [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.10.0...2023.12.1) --- updated-dependencies: - dependency-name: fsspec dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Update s3fs as well * Fix s3fs --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Josh Moore <[email protected]> * Add type hints to zarr.create (#1536) * Add type hints to zarr.create * Use protocol for MetaArray * Use protocol for Synchronizer * Fix Path typing * Add release note * Fix dim separator typing * Ignore ... in coverage reporting * Fix chunk typing --------- Co-authored-by: Davis Bennett <[email protected]> * Remove unused mypy ignore comments (#1602) Co-authored-by: Davis Bennett <[email protected]> * Bump actions/setup-python from 4.7.1 to 5.0.0 (#1605) Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v4.7.1...v5.0.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <[email protected]> * Bump github/codeql-action from 2 to 3 (#1609) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/github/codeql-action/compare/v2...v3) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * chore: update pre-commit hooks (#1448) * chore: update pre-commit hooks updates: - https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit - [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.224...v0.1.8) - [github.com/psf/black: 23.10.1 → 23.12.0](https://github.com/psf/black/compare/23.10.1...23.12.0) - [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6) - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v4.5.0) - [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.3.0...v1.7.1) * Attempt to fix ruff * Use isinstance --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Josh Moore <[email protected]> * chore: update pre-commit hooks (#1618) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.8...v0.1.9) - [github.com/psf/black: 23.12.0 → 23.12.1](https://github.com/psf/black/compare/23.12.0...23.12.1) - [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.7.1...v1.8.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump fsspec from 2023.12.1 to 2023.12.2 (#1606) * Bump fsspec from 2023.12.1 to 2023.12.2 Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2. - [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.12.1...2023.12.2) --- updated-dependencies: - dependency-name: fsspec dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Update requirements_dev_optional.txt --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <[email protected]> * Bump pytest-doctestplus from 1.0.0 to 1.1.0 (#1619) Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0. - [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases) - [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst) - [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.0.0...v1.1.0) --- updated-dependencies: - dependency-name: pytest-doctestplus dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pytest from 7.4.3 to 7.4.4 (#1622) * chore: update pre-commit hooks (#1626) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.9...v0.1.11) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Create TEAM.md (#1628) * Drop python 3.8 and numpy 1.20 (#1557) * Drop 3.8 and add 3.12 * Try removing line_profiler * Also bump the minimal numpy to 1.21 * Drop 3.12 again * Revert "Try removing line_profiler" This reverts commit 837854bec99a9d25aece2ead9666f01690d228cc. * Update release.rst --------- Co-authored-by: Joe Hamman <[email protected]> Co-authored-by: jakirkham <[email protected]> * Add Norman Rzepka to core-dev team (#1630) * chore: update pre-commit hooks (#1633) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.11...v0.1.13) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump actions/download-artifact from 3 to 4 (#1611) * Bump actions/download-artifact from 3 to 4 Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](https://github.com/actions/download-artifact/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Also bump upload-artifact see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes > Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported. --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <[email protected]> Co-authored-by: Josh Moore <[email protected]> * Update tutorial.rst to include section about accessing Zip Files on S3 (#1615) * Update tutorial.rst to include section about accessing Zip Files on S3 Per discussion here, add information about about accessing zip files on s3: https://github.com/zarr-developers/zarr-python/discussions/1613 * Update release.rst * Implement d-v-b's suggestions --------- Co-authored-by: Davis Bennett <[email protected]> Co-authored-by: Josh Moore <[email protected]> * doc(v3): add v3 roadmap and design document (#1583) * doc(v3): add v3 roadmap and design document * Update v3-roadmap-and-design.md * updates after latest round of reviews * Update v3-roadmap-and-design.md Co-authored-by: Norman Rzepka <[email protected]> * Update v3-roadmap-and-design.md Co-authored-by: Sanket Verma <[email protected]> --------- Co-authored-by: Norman Rzepka <[email protected]> Co-authored-by: Sanket Verma <[email protected]> * chore: update pre-commit hooks (#1636) updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.13...v0.1.14) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fix zarr sync (#1663) This patch removes fasteners and disables zarr.sync which uses process and thread Co-authored-by: Wei Ouyang <[email protected]> * Update release.rst (#1621) * Update release.rst * Update release.rst * Change 2.16.2 → 2.17.0 * Update moto for test_s3 * Skip bsddb3 tests to prevent warning failure * Fix more user warning tests * Fix even more user warning tests * Skip coverage for importorskips * Move to have_X skip method for deps * Update release.rst (PR#1663) * Fix test_core.py 'compile' issues * Add black formatting * Drop Windows/3.9 build due to unrelated failures * fix typo --------- Co-authored-by: Davis Bennett <[email protected]> Co-authored-by: Josh Moore <[email protected]> * Bump numpy from 1.24.3 to 1.26.1 (#1543) Bumps [numpy](https://github.com/numpy/numpy) from 1.24.3 to 1.26.1. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.24.3...v1.26.1) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Davis Bennett <[email protected]> Co-authored-by: Josh Moore <[email protected]> Co-authored-by: Joe Hamman <[email protected]> * chore: update pre-commit hooks (#1642) * chore: update pre-commit hooks updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.14...v0.2.1) - [github.com/psf/black: 23.12.1 → 24.2.0](https://github.com/psf/black/compare/23.12.1...24.2.0) * run black incl. comments for '...' --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Josh Moore <[email protected]> * Bump ipywidgets from 8.1.0 to 8.1.1 (#1538) Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.0 to 8.1.1. - [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases) - [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.0...8.1.1) --- updated-dependencies: - dependency-name: ipywidgets dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Davis Bennett <[email protected]> Co-authored-by: Josh Moore <[email protected]> * Proper argument for numpy.reshape (#1425) `numpy.reshape` not only accepts a tuple of ints, but also a simple int. Besides `(10)` is not a tuple and is identical to `10`, unlike `(10,)`. * Bump ipywidgets from 8.1.1 to 8.1.2 (#1666) Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.1 to 8.1.2. - [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases) - [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.1...8.1.2) --- updated-dependencies: - dependency-name: ipywidgets dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * docs: ZIP-related tweaks (#1641) * docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style * docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes * docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style * docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes * Bump numpy from 1.26.1 to 1.26.4 (#1669) Bumps [numpy](https://github.com/numpy/numpy) from 1.26.1 to 1.26.4. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.26.1...v1.26.4) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Change occurrences of % and format() to f-strings (#1423) Co-authored-by: Joe Hamman <[email protected]> Co-authored-by: Josh Moore <[email protected]> * chore: update pre-commit hooks (#1672) updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.1 → v0.2.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.1...v0.2.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Bump pymongo from 4.6.1 to 4.6.2 (#1674) Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.6.1 to 4.6.2. - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/4.6.2/doc/changelog.rst) - [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.1...4.6.2) --- updated-dependencies: - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 (#1677) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.1 to 3.0.2. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.1...v3.0.2) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Update config.yml with Zulip * Type dimension separator (#1620) Co-authored-by: Davis Bennett <[email protected]> * Replace Gitter with new Zulip Chat link (#1685) * Replace Gitter with Zulip * Replace Gitter with Zulip in remaining places * Bump redis from 5.0.1 to 5.0.2 (#1688) Bumps [redis](https://github.com/redis/redis-py) from 5.0.1 to 5.0.2. - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](https://github.com/redis/redis-py/compare/v5.0.1...v5.0.2) --- updated-dependencies: - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 (#1691) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.11 to 1.8.12. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.11...v1.8.12) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pytest-doctestplus from 1.1.0 to 1.2.0 (#1693) Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.1.0 to 1.2.0. - [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases) - [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst) - [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.1.0...v1.2.0) --- updated-dependencies: - dependency-name: pytest-doctestplus dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Fix RTD build (#1694) * Update release.rst for v2.17.1 (#1673) * Update release.rst for v2.17.1 * Change the copyright year from 2023 → 2024. * Update release.rst for v2.17.1 * Bump pytest-timeout from 2.2.0 to 2.3.1 (#1697) Bumps [pytest-timeout](https://github.com/pytest-dev/pytest-timeout) from 2.2.0 to 2.3.1. - [Commits](https://github.com/pytest-dev/pytest-timeout/compare/2.2.0...2.3.1) --- updated-dependencies: - dependency-name: pytest-timeout dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 (#1690) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.2 to 3.0.3. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.2...v3.0.3) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Sanket Verma <[email protected]> * docs(tutorial.rst): fix link to GCSMap (#1689) * Update installation.rst stating version support policy (#1665) * Update installation.rst stating version support policy * Update docs/installation.rst Co-authored-by: Joe Hamman <[email protected]> * Update docs/installation.rst --------- Co-authored-by: Joe Hamman <[email protected]> * Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 (#1700) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.12 to 1.8.14. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.12...v1.8.14) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pytest-doctestplus from 1.2.0 to 1.2.1 (#1699) Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.2.0 to 1.2.1. - [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases) - [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst) - [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.2.0...v1.2.1) --- updated-dependencies: - dependency-name: pytest-doctestplus dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Sanket Verma <[email protected]> * Bump redis from 5.0.2 to 5.0.3 (#1698) Bumps [redis](https://github.com/redis/redis-py) from 5.0.2 to 5.0.3. - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](https://github.com/redis/redis-py/compare/v5.0.2...v5.0.3) --- updated-dependencies: - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Sanket Verma <[email protected]> * Add Python 3.12 to CI (#1719) * Update python-package.yml * bump numpy versions * bump min python version * Update release.rst * Bump pytest-cov from 4.1.0 to 5.0.0 (#1722) Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 4.1.0 to 5.0.0. - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v5.0.0) --- updated-dependencies: - dependency-name: pytest-cov dependency-type: direct:development update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * chore: update pre-commit hooks (#1708) updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.2...v0.3.3) - [github.com/psf/black: 24.2.0 → 24.3.0](https://github.com/psf/black/compare/24.2.0...24.3.0) - [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.8.0...v1.9.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Sanket Verma <[email protected]> * chore: update pre-commit hooks (#1723) updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fix release notes (following #1719) (#1725) * Override ipython repr methods. (#1724) Closes #1716 This avoids expensive lookups against object stores. * Bump pymongo from 4.6.2 to 4.6.3 (#1729) * Remove v1 and v2 specification (#1582) * Remove v1 and v2 specification * fix warning --------- Co-authored-by: Davis Bennett <[email protected]> * chore: update pre-commit hooks (#1738) updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.3.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.3.5) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Optimize Array.info and Group.info (#1733) * Optimize Array.info. Avoid repeated computes of the same value (getsize) * Don't have InfoReporter query items twice. Apparently IPython will run both __repr__ and _repr_html_ so we were calling `getsize` twice. * Group too * Apply suggestions from code review Co-authored-by: Joe Hamman <[email protected]> --------- Co-authored-by: Joe Hamman <[email protected]> * Bump actions/setup-python from 5.0.0 to 5.1.0 (#1736) Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.0.0 to 5.1.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v5.0.0...v5.1.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Couple fixes (#1737) * Use `is` when comparing `type` of two objects * Unnecessary `None` provided as default * Fix tests with Pytest 8 (#1714) * Bump pytest version * Use editable install when testing --------- Co-authored-by: Sanket Verma <[email protected]> * Avoid redundant __contains__ (#1739) Let's try grabbing the array.json and group.json files, and check for `*NotFoundError`, instead of using contains first. Co-authored-by: Davis Bennett <[email protected]> * Array & Group: Use already loaded attributes to populate cache. (#1734) * Array: Use already loaded attributes to populate cache. * Group: Use already loaded attributes to populate cache. * Fix * Add release note * Optimize attribute setting (#1741) * Optimize attribute setting * Add release note --------- Co-authored-by: Davis Bennett <[email protected]> * Make sure fs exceptions are raised if not MissingFs exceptions (clone) (#1604) * Make sure fs exceptions are raised if not Missing * lint * add missing argument in tests, lint * clear memory filesystem during test * improve commenting * add memory_store fixture, getitems performance * Update release.rst * improve FSStore.test_exception coverage --------- Co-authored-by: Martin Durant <[email protected]> Co-authored-by: Joe Hamman <[email protected]> Co-authored-by: Josh Moore <[email protected]> Co-authored-by: Sanket Verma <[email protected]> * chore(release): update changelog for 2.17.2 (#1775) * chore(docs): reset release notes as unreleased (#1776) * Bump codecov/codecov-action from 3 to 4 (#1647) * Bump codecov/codecov-action from 3 to 4 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v3...v4) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Set codecov env --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Josh Moore <[email protected]> * Update release.rst for v2.17.2 (#1778) * Update release.rst for v2.17.2 * Minor edits --------- Co-authored-by: Joe Hamman <[email protected]> * Deprecate the experimental v3 implementation (#1802) * deprecate(exp-v3): Add a future warning about the pending removal of the experimental v3 implementation * ignore warning * add test * chore: update pre-commit hooks (#1779) updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.3.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.5...v0.3.7) - [github.com/psf/black: 24.3.0 → 24.4.0](https://github.com/psf/black/compare/24.3.0...24.4.0) - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fix `is_total_slice` for size-1 dimensions (#1800) Closes #1730 Co-authored-by: Ryan Abernathey <[email protected]> Co-authored-by: Joe Hamman <[email protected]> * add note to the top of the release page noting the plan for 2.18.* and 3.0 (#1816) * Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 (#1824) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.3 to 3.0.4. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.3...v3.0.4) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * dep(docs): deprecate experimental v3 support in docs (#1807) * dep(docs): deprecate experimental v3 support in docs * Apply suggestions from code review Co-authored-by: Josh Moore <[email protected]> Co-authored-by: Sanket Verma <[email protected]> --------- Co-authored-by: Josh Moore <[email protected]> Co-authored-by: Sanket Verma <[email protected]> * Bump h5py from 3.10.0 to 3.11.0 (#1786) Bumps [h5py](https://github.com/h5py/h5py) from 3.10.0 to 3.11.0. - [Release notes](https://github.com/h5py/h5py/releases) - [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst) - [Commits](https://github.com/h5py/h5py/compare/3.10.0...3.11.0) --- updated-dependencies: - dependency-name: h5py dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <[email protected]> * Bump redis from 5.0.3 to 5.0.4 (#1810) Bumps [redis](https://github.com/redis/redis-py) from 5.0.3 to 5.0.4. - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](https://github.com/redis/redis-py/compare/v5.0.3...v5.0.4) --- updated-dependencies: - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 (#1801) * deprecate(stores): add deprecation warnings to DBMStore, LMDBStore, SQLiteStore, MongoDBStore, RedisStore, and ABSStore * filter warnings in pytest config * more deprecation warnings in docstrings * add release note * use np.inf instead of PINF/NINF (#1842) * use np.inf instead of PINF/NINF * update release notes * chore: update pre-commit hooks (#1825) updates: - [github.com/astral-sh/ruff-pre-commit: v0.4.1 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.1...v0.4.3) - [github.com/psf/black: 24.4.0 → 24.4.2](https://github.com/psf/black/compare/24.4.0...24.4.2) - [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Enable ruff/bugbear rules (B) and fix issues (#1702) * Enable ruff/bugbear rules (B) As suggested by Repo-Review. * Fix ruff/bugbear issue (B007) B007 Loop control variable `key` not used within loop body https://docs.astral.sh/ruff/rules/unused-loop-control-variable/ * Fix ruff/bugbear issue (B015) B015 Pointless comparison. Did you mean to assign a value? Otherwise, prepend `assert` or remove it. https://docs.astral.sh/ruff/rules/useless-comparison/ * Fix ruff/bugbear issues (B028) B028 No explicit `stacklevel` keyword argument found https://docs.astral.sh/ruff/rules/no-explicit-stacklevel/ * Fix ruff/bugbear issues (B904) B904 Within an `except` clause, raise exceptions with `raise ... from err` or `raise ... from None` to distinguish them from errors in exception handling https://docs.astral.sh/ruff/rules/raise-without-from-inside-except/ * Document changes in docs/release.rst * Disable ruff/bugbear rule (B017) B017 `pytest.raises(Exception)` should be considered evil https://docs.astral.sh/ruff/rules/assert-raises-exception/ --------- Co-authored-by: Joe Hamman <[email protected]> * Release notes for 2.18.0 (#1843) * doc: cleanup release notes for 2.18.0 * Update release.rst (#1850) * Group dependabot updates (#1854) * chore: update pre-commit hooks (#1876) updates: - [github.com/astral-sh/ruff-pre-commit: v0.4.3 → v0.4.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.3...v0.4.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fix a regression with scalar indexing due to #1800 (#1875) * release notes for 2.18.1 (#1885) * reset release notes (#1886) * Add zstd to old V3 supported codecs (#1914) * add zstd to old V3 supported codecs * get to full test coverage and add release note * fix pre-commit * doc: update release notes for 2.18.2 (#1915) * Drop support for Python 3.9 * Revert "Drop support for Python 3.9" This reverts commit a054afbbdaf7c8560d0ce5df77af969bc863e335. * Update TEAM.md (#2071) * [v2] Fix doctests with numpy 2.0 (#2073) * Fix version number in built docs (#2044) * Fix orthogonal indexing with scalar. (#1947) Co-authored-by: David Stansby <[email protected]> * Bump the requirements group across 1 directory with 7 updates (#2092) Bumps the requirements group with 7 updates in the / directory: | Package | From | To | | --- | --- | --- | | [numpy](https://github.com/numpy/numpy) | `1.26.4` | `2.0.1` | | [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) | `8.1.2` | `8.1.3` | | [setuptools-scm](https://github.com/pypa/setuptools_scm) | `8.0.4` | `8.1.0` | | [pytest](https://github.com/pytest-dev/pytest) | `8.1.1` | `8.3.2` | | [lmdb](https://github.com/jnwatson/py-lmdb) | `1.4.1` | `1.5.1` | | [redis](https://github.com/redis/redis-py) | `5.0.4` | `5.0.8` | | [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.6.3` | `4.8.0` | Updates `numpy` from 1.26.4 to 2.0.1 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v1.26.4...v2.0.1) Updates `ipywidgets` from 8.1.2 to 8.1.3 - [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases) - [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.2...8.1.3) Updates `setuptools-scm` from 8.0.4 to 8.1.0 - [Release notes](https://github.com/pypa/setuptools_scm/releases) - [Changelog](https://github.com/pypa/setuptools_scm/blob/main/CHANGELOG.md) - [Commits](https://github.com/pypa/setuptools_scm/compare/v8.0.4...v8.1.0) Updates `pytest` from 8.1.1 to 8.3.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.3.2) Updates `lmdb` from 1.4.1 to 1.5.1 - [Changelog](https://github.com/jnwatson/py-lmdb/blob/master/ChangeLog) - [Commits](https://github.com/jnwatson/py-lmdb/compare/py-lmdb_1.4.1...py-lmdb_1.5.1) Updates `redis` from 5.0.4 to 5.0.8 - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](https://github.com/redis/redis-py/compare/v5.0.4...v5.0.8) Updates `pymongo` from 4.6.3 to 4.8.0 - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.3...4.8.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-major dependency-group: requirements - dependency-name: ipywidgets dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements - dependency-name: setuptools-scm dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: lmdb dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump the actions group with 2 updates (#2087) Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `actions/setup-python` from 5.1.0 to 5.1.1 - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v5.1.0...v5.1.1) Updates `pypa/gh-action-pypi-publish` from 1.8.14 to 1.9.0 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.14...v1.9.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [v2] Drop support for Python 3.9 (#2074) * Drop support for Python 3.9 * Ignore B905 ruff rule * Fix release notes * Fix Array.__array__ for numpy 2.1 (#2106) * Fix Array.__array__ for numpy 2.1 * Add changelog * Depend on np.array for array coercions * Bump test version of numcodecs (#2114) * Bump test version of numcodecs * Fix test for numcodecs 0.13 * fix: numpy 1.24 compat for Array.__array__ (#2123) * Deprecate N5Store (#2103) * deprecate(n5): add deprecation warning to N5Store * also deprecate N5FSStore * docs * fix doc * Run tests on numpy 1.23 (#2124) * Bump the requirements group across 1 directory with 3 updates (#2129) Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python). Updates `numpy` from 2.0.1 to 2.1.0 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v2.0.1...v2.1.0) Updates `ipywidgets` from 8.1.3 to 8.1.5 - [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases) - [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.3...8.1.5) Updates `azure-storage-blob` from 12.16.0 to 12.21.0 - [Release notes](https://github.com/Azure/azure-sdk-for-python/releases) - [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md) - [Commits](https://github.com/Azure/azure-sdk-for-python/compare/azure-storage-blob_12.16.0...azure-storage-blob_12.21.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: ipywidgets dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements - dependency-name: azure-storage-blob dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * chore: bump minimum numpy version to 1.24 (#2127) * chore: bump minimum version to 1.24 * Update .github/workflows/python-package.yml * Remove un-needed package installs in CI (#2095) * Bump the actions group with 2 updates (#2146) Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `actions/setup-python` from 5.1.1 to 5.2.0 - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v5.1.1...v5.2.0) Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.9.0...v1.10.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump numpy from 2.1.0 to 2.1.1 in the requirements group (#2151) Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy). Updates `numpy` from 2.1.0 to 2.1.1 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v2.1.0...v2.1.1) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * chore(docs): update release notes ahead of 2.18.4 (#2152) * Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group (#2161) Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.0...v1.10.1) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [docs] remove primary sidebar from tutorial (#2142) * remove primary sidebar from tutorial * lint * Bump pytest from 8.3.2 to 8.3.3 in the requirements group (#2172) Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest). Updates `pytest` from 8.3.2 to 8.3.3 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pypa/gh-action-pypi-publish in the actions group (#2220) Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.1...v1.10.2) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Update TEAM.md (#2227) * Bump the requirements group across 1 directory with 3 updates (#2284) Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py). Updates `redis` from 5.0.8 to 5.1.0 - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](https://github.com/redis/redis-py/compare/v5.0.8...v5.1.0) Updates `pymongo` from 4.8.0 to 4.10.0 - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.8.0...4.10.0) Updates `h5py` from 3.11.0 to 3.12.1 - [Release notes](https://github.com/h5py/h5py/releases) - [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst) - [Commits](https://github.com/h5py/h5py/compare/3.11.0...3.12.1) --- updated-dependencies: - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: h5py dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (#2288) Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver). Updates `pymongo` from 4.10.0 to 4.10.1 - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.10.0...4.10.1) --- updated-dependencies: - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Fix low contrast box titles (#2287) (#2292) * Bump pypa/gh-action-pypi-publish in the actions group (#2304) Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.2...v1.10.3) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump the requirements group with 2 updates (#2303) Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py). Updates `numpy` from 2.1.1 to 2.1.2 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](https://github.com/numpy/numpy/compare/v2.1.1...v2.1.2) Updates `redis` from 5.1.0 to 5.1.1 - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](https://github.com/redis/redis-py/compare/v5.1.0...v5.1.1) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (#2326) Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs). Updates `numcodecs` from 0.13.0 to 0.13.1 - [Release notes](https://github.com/zarr-developers/numcodecs/releases) - [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst) - [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.13.0...v0.13.1) --- updated-dependencies: - dependency-name: numcodecs dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * remove zarr.types from v2 --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Janick Martinez Esturo <[email protected]> Co-authored-by: David Stansby <[email protected]> Co-authored-by: Dimitri Papadopoulos Orfanos <[email protected]> Co-authored-by: Davis Bennett <[email protected]> Co-authored-by: Josh Moore <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: jakirkham <[email protected]> Co-authored-by: Jeff Peck <[email protected]> Co-authored-by: Norman Rzepka <[email protected]> Co-authored-by: Sanket Verma <[email protected]> Co-authored-by: Hood Chatham <[email protected]> Co-authored-by: Wei Ouyang <[email protected]> Co-authored-by: Daniel Jahn (dahn) <[email protected]> Co-authored-by: Deepak Cherian <[email protected]> Co-authored-by: Ian Carroll <[email protected]> Co-authored-by: Martin Durant <[email protected]> Co-authored-by: Ryan Abernathey <[email protected]> Co-authored-by: Jonny Saunders <[email protected]>
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#2123 fixed a bug that was introduced with an older version of numpy. This puts back numpy 1.23 in the test matrix on GitHub actions to catch stuff like this in the future.
I think this was previously enabled, but accidentally lost when Python 3.9 support was dropped.