Create Protein_report_in_protXML_to_ID_list_in_TSV.sh

veitveit · Aug 30, 2023 · 83d0556 · 83d0556
1 parent b0eb67d
commit 83d0556
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/shims/Protein_report_in_protXML_to_ID_list_in_TSV.sh b/shims/Protein_report_in_protXML_to_ID_list_in_TSV.sh
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+#!/bin/bash
+xmllint --xpath "//*[local-name()='protein']/@protein_name" $1 | cut -d '|' -f2 > $2