Update shims.md

veitveit · Aug 30, 2023 · b0eb67d · b0eb67d
1 parent 1d012c6
commit b0eb67d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/shims.md b/shims.md
@@ -1,3 +1,3 @@
 | input type | input format | operation  | output type  | output format | bash | comment
 |---|---|---|---|---|---|---|
-| Protein report | protXML | Conversion | ID list | TSV | xmllint --xpath "//*[local-name()='protein']/@protein_name" input \| cut -d '\|' -f2 > output | assumes UniProt style FASTA was used |
+| Protein report (http://edamontology.org/data_0896) | protXML (http://edamontology.org/format_3747) | Conversion (http://edamontology.org/operation_3434) | ID list (http://edamontology.org/data_2872) | TSV (http://edamontology.org/format_3475) | #!/bin/bash<br />xmllint --xpath "//*[local-name()='protein']/@protein_name" $1 \| cut -d '\|' -f2 > $2 | assumes UniProt style FASTA was used |