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20 Open 39 Closed
20 Open 39 Closed
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Issues list

Questions on .bed File Format in chess extract with Sparse Input
#64 opened Jan 6, 2025 by liuyc27
Deprecated parameters in scikit-image & scikit-learn
#63 opened Dec 14, 2023 by niederhuth
1
Normalization of .hic files
#62 opened Aug 30, 2023 by aminakur
1
Chess sim output .tsv file explained
#61 opened Aug 10, 2023 by aminakur
1
_pickle.PicklingError
#57 opened Aug 10, 2022 by PengfeiInTuebingen
2
error when running extract on .hic files
#55 opened May 26, 2022 by ZQY19960810
1
Should the users be concerned about the problem raised in the new Contradictory Results bioRxiv preprint?
#49 opened Sep 26, 2021 by P-GB-W
2
Different resolution produce different result
#48 opened Jul 21, 2021 by biozzq
1
No valid region pairs found?
#47 opened Jun 7, 2021 by gdolsten
1
Conditions for conservation analysis of syntenic blocks
#45 opened May 18, 2021 by LAlvarezGlez
5
Error when running CHESS on JUICER HIC files
#38 opened Feb 11, 2021 by rkuzya
2
Prepare the normalized hic input for CHESS
#35 opened Jan 22, 2021 by biozzq
9
It's difficult to find any significant changes in 3D organization of chromatin in highly dissimilar regions
#34 opened Jan 20, 2021 by biozzq
14
Error when run chess_extract
#25 opened Dec 14, 2020 by yanchunzhang
3
plot output?
#24 opened Dec 2, 2020 by rikrdo89
1
Chess sim quits with ERROR "all regions need to span at least 20 bins "
#23 opened Nov 30, 2020 by rikrdo89
16
Chess sim command runtime improvement heuristics?
#18 opened Nov 17, 2020 by jmcbroome
6
chess sim result wit all NAN
#16 opened Nov 13, 2020 by chenggang108
13
hints to chess extract
#11 opened Oct 28, 2020 by cgirardot
1
Extracting genomic coordinates of differential features enhancement New feature or request good first issue Good for newcomers
#10 opened Oct 27, 2020 by cgirardot
17
ProTip! Updated in the last three days: updated:>2025-01-19.