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Fix macOS build errors; fv3atm: register diagnostics from stochastic physics only if allocated; ccpp-physics: cleanup CCPP cmake flags part 1 #897

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Revert .gitmodules and update submodule pointer for fv3atm

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Merged

Fix macOS build errors; fv3atm: register diagnostics from stochastic physics only if allocated; ccpp-physics: cleanup CCPP cmake flags part 1 #897

Revert .gitmodules and update submodule pointer for fv3atm
614c43f
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